SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6056

Length: 1441 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6056

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25084	7/44
SustainPine v2.0	sp_v2.0_unigene32952	34/44

Source	Descriptions	Term	Type	e value	Identity
AutoFact	membrane-anchored ubiquitin-fold protein 6 [Arabidopsis thaliana] sp\|Q8GWJ6.1\|MUB6_ARATH RecName: Full=Membrane-anchored ubiquitin-fold protein 6; Short=AtMUB6; Short=Membrane-anchored ub-fold protein 6; Flags: Precursor dbj\|BAC43392.1\| unknown protein [A	-	-	2.0e-35	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	ubiquitin family protein	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Membrane-anchored ubiquitin-fold protein, HCG-1	IPR017000	-	0.0	-
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPM2

Fln msg:

Fln protein: MSGEEYLEVKFRLHDGTDIGPKRYLSATTVATLKESVLAQWPKEKENGPRTINDVKLINAGKILENNKTLGECRGPICDLPGGVITMHVVLRPLSAEKGAKSSLQTRQRTANACA*

Protein Length: 117

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTTCCTGGCTTTGCTTGAAGTTGTAAAGAAGAAATGGGATTGGAAAAAACCAAGAGGCGCATATACACATATTGGGTTGAATAATTTAGTGCACATTGTGGCAATGACACGGCTTAGAGCCGCAGTAATGATCAATAAATAGTCAGGCAAGATGCATCATTGCCTCAATTATTTGTAGGATCAGGCTGTATTTAGTGTTTGACAGGTCTTTCCATTTTTTGTAGTTCTGGGTTAGAATTGTTTTGCTTCGAGGAAGGTCAAATATTGCCAAGACCTTGATTTCAAGTTTTTTCAAACAGAAGAGTCTTTGGGTGTTACAAATGGTGGAGTTTGCAGATTGAAGCTGTGTTTTATGAAGGGTATCTGCAAGAGATGTTATCATAGTTTTTTTTCGAGGAAACCCAAGTCTGTAATAGCGTTTTTCTGGGTTACCCTTTAAGGTGTGACAAGGGTTCCCAAACTGAGGGTTTTAAGCTGCTTTTAGAGGGTTTTCTGAACCAGGATCTGGGTATTTTGAGAA_-_ATGTCAGGGGAAGAGTATTTGGAGGTCAAGTTCAGGCTCCATGATGGTACAGACATTGGTCCCAAAAGATATTTATCTGCCACCACTGTTGCCACCTTGAAGGAAAGCGTCCTTGCACAATGGCCCAAAGAAAAAGAGAACGGGCCAAGAACCATAAATGATGTTAAGTTGATCAATGCTGGAAAGATATTGGAGAACAATAAAACTCTTGGGGAGTGCAGGGGTCCAATATGTGATCTTCCTGGTGGAGTCATAACTATGCATGTTGTTTTGCGCCCTCTGTCAGCTGAAAAAGGAGCGAAAAGCAGCCTTCAGACTCGCCAAAGGACAGCAAATGCATGTGCATAA___TTCTATAGCCTGATGGCATTCAAAAGGAAAACAATAACCTTTTATGTCGCGATTCTCCATATTTGATTTCGTTCACTGTGACCAGAGGTGACGTGTCATATCTAATTTATATGTCGAATGTCGGCTCCAGCAAGTGATTTTTTCCGGCGACAAAAGGTGACTCATTTACAGTGGAAGATGGCATTTACAGAAGCTAGTGTTCATAACTTCATTGGTAACATATGTTGGTGGTGGTCACTGTTAATCAAAAATTCCTTCACTAAAGCTCTTATTTTTGTAATTGGAGGAACCCAAATTTGAAGAAATGCATTTTACAAATATGATTTTATAACATTCGCTTCCCTGAGATGTCTGCGTGAGGGTGTTGTGCAGGCAATGTTTCTTTAGTTGTGATTGTTTTTATTATCTTTGTGTTAGTCCTATGTCCATGCAAATGTGGACAGATGGCACATAAATAAGATTATTGAAAGAGTTTGAGATTGATTCCAATGATAATAGAAAGTAATATGATGAGTGTTTTCAGTCGTCAAATGAAAAATATTTCAGCAA

Fln Alignment:

Contig6056___MSGEEYLEVKFRLHDGTDIGPKRYLSATTVATLKESVLAQWPKEKENGPRTINDVKLINAGKILENNKTLGECRGPICDLPGGVITMHVVLRPLSAEKG
A9NPM2_______________MSGEEYLEVKFRLHDGTDIGPRRYLSATTVATLKESVLAQWPKEKENGPRTINDVKLINAGKILENNKTLGECRGPICDLPGGVITMHVVLRPPSAEKG

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
256	88		11		0.923564
258	11			88	0.923564
283	22		77		0.999999
401	81		18		0.999994
585		11	88		0.923564
586			11	88	0.923564
591			88	11	0.923564
592		88	11		0.923564
593	11			88	0.923564
596	88			11	0.923564
599	88		11		0.923564
600		11		88	0.923564
601			88	11	0.923564
607		11	88		0.923564
608	88			11	0.923564
877		80		20	0.995493
878		80	20		0.995493
880	80	20			0.995493
881	80			20	0.995493
882			80	20	0.995493
884	60		20		0.99255
886	80			20	0.995493
888		83		16	0.994512
889	66	16		16	0.988813
890	83	16			0.994512
891	66	16	16		0.988813
893		16	83		0.994512
894	16	83			0.994512
895	83	16			0.994512
897			83	16	0.994512
898			16	83	0.994512
901	83		16		0.994512
903	83	16			0.994512
905		16		83	0.994512
1016		16		83	0.994512
1021	83		16		0.994512
1023		16		83	0.994512
1024		16	83		0.994512
1026		83		16	0.994512
1031		85		14	0.993533
1034		14	85		0.993533
1035		85		14	0.993533
1036	85	14			0.993533
1124	76		5	17	1.0
1127	76	17	5		1.0
1131		23		76	1.0
1132	17	5	76		1.0
1133		17	76	5	1.0
1349	75			25	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain