SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6023

Length: 962 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6023

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14429	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] sp\|Q9LKF9.2\|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit	-	-	67%
FL-Next	sp=Cleavage and polyadenylation specificity factor subunit 2; Oryza sativa subsp. japonica (Rice).	-	-	84%
Blast2go	cleavage and polyadenylation specificity factor	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	mRNA cleavage	GO:0006379	Biological Process	82%
Blast2go	mRNA polyadenylation	GO:0006378	Biological Process	82%
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	DNA binding	GO:0003677	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	82%
Blast2go	mRNA cleavage and polyadenylation specificity factor complex	GO:0005847	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Beta-lactamase-like	IPR001279	-	0.0	-
Sma3	RNA-metabolising metallo-beta-lactamase	IPR011108	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q652P4

Fln msg: Separated hits, possible frame ERROR between 93 and 116, Distance to subject end: 276 aas, your sequence is shorter than subject: 321 - 738

Fln protein: RRDLGCHSAGHLLGGTIWKITKDGEDVIYAxxxxxxxxxHLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDMILKVLRGDGNVLLPVETAGRVLELILCLDQHWASHHLTYPIAFLTNVATSTVDYVKSFLEWMSDSIAKSFEHTRDNAFQLKHFNVLLTKKELEKLPPGPKVVLASMASLEEGFSRDIFVDWATDAKNRRDLGCHSGQFGTLARMLQAEPPPKAVKVTVSKRVPLTGEELRAYEEEQSRIKKEEALKASNAKEEDAKSSQVGVDAISDPMVIDSAPGLVHQKELLLDIEFVFCDWFYSITYDC

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGGACATCTTTTGGGTGGAACTATTTGGAAAATAACAAAAGATGGAGAAGATGTGATTTATGCAGTxxxxxxxxxxxxxxxxxxxxxxxxGCATTTGAATGGGACAGTCTTAGAATCATTTGTACGTCCAGCAGTACTGATAACTGATGCTTATAATGCCTTGAACAACCAACCTTCACGGCGCCAAAGAGATCAAGAATTTCTGGATATGATATTAAAGGTGCTACGTGGAGATGGCAATGTGCTCCTCCCTGTGGAGACAGCAGGTCGTGTGCTCGAGCTTATTTTATGTTTGGACCAGCACTGGGCTTCTCATCACTTAACTTATCCAATTGCCTTCTTAACTAATGTCGCTACAAGTACAGTAGATTATGTCAAGAGCTTCCTTGAATGGATGAGTGATTCAATAGCGAAATCCTTTGAGCATACTCGTGACAATGCTTTCCAACTAAAGCATTTCAATGTGTTGCTTACCAAGAAAGAGTTGGAAAAATTGCCACCAGGTCCAAAGGTGGTCCTTGCATCTATGGCCAGTTTGGAGGAGGGGTTTTCTCGTGATATTTTTGTAGACTGGGCAACAGATGCCAAGAATCGTCGTGACCTTGGCTGTCACTCAGGTCAGTTTGGGACTTTGGCTCGCATGCTTCAAGCAGAGCCACCACCAAAAGCTGTAAAAGTCACTGTGAGCAAGAGGGTTCCCTTAACTGGTGAAGAATTAAGAGCATATGAAGAGGAGCAAAGTCGAATAAAAAAAGAGGAAGCTTTAAAAGCAAGCAATGCTAAAGAGGAGGATGCTAAATCCTCTCAGGTTGGTGTGGATGCCATTTCAGATCCAATGGTTATTGATTCTGCACCTGGTCTAGTCCATCAGAAGGAACTACTCCTCGACATCGAGTTTGTTTTTTGTGATTGGTTTTACTCCATCACCTATGACTGTT

Fln Alignment:

Contig6023___HSAGHLLGGTIWKITKDGEDVIYAVxxxxxxxxHLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDMILKVLRGDGNVLLPVETAGRVLELILCLDQHWASHHLTYPIAFLTNVATSTVDYVKSFLEWMSDSIAKSFEHTRDNAFQLKHFNVXXXXXXXXXXXXXXXVVLASMASLEEGFSRDIFVDWATDAKNRRDLGCHSGQFGTLARMLQAEPPPKAVKVTVSKRVPLTGEELRAYEEEQSRIKKEEALKASNAKEEDAKSSQVGVDAISDPMVIDSA
Q652P4_______________HVAGHDLGGTVWKITKDGEDVVYAVxxxxxxxxHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKN-LVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLGSNAKASDPMVIDAS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
292		33	66		0.997452
299	33			66	0.997452
300		33	66		0.997452
303		66		33	0.997452
311	66	33			0.997452
312	33			66	0.997452
313		33		66	0.997452
315		33		66	0.997452
327	75	25			0.996473
329		75		25	0.996473
330	75	25			0.996473
331		75	25		0.996473
334	25		75		0.996473
335		25	75		0.996473
339		75	25		0.996473
340			25	75	0.996473
343	75		25		0.996473
349		25		75	0.996473
625	33		66		0.997452
627		33	66		0.997452
629		66		33	0.997452
630	33	66			0.997452
633			66	33	0.997452
634	33		66		0.997452
641	33	66			0.997452
642	33			66	0.997452
643		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain