SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6018

Length: 1353 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6018

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4679	51/56
SustainPine v2.0	sp_v2.0_unigene63885	3/56

Source	Descriptions	Term	Type	Identity
AutoFact	chaperone protein dnaJ 15 [Arabidopsis thaliana] sp\|Q9ZSY2.1\|DNJ15_ARATH RecName: Full=Chaperone protein dnaJ 15; Short=AtDjB15; Short=AtJ15; AltName: Full=Protein ALTERED RESPONSE TO GRAVITY; Short=AtARG1 gb\|AAF26045.1\|AC015986_8 ARG1 protein (Altered Re	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	85%
Blast2go	phototropism	GO:0009638	Biological Process	85%
Blast2go	positive gravitropism	GO:0009958	Biological Process	85%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	85%
Blast2go	cytoskeletal protein binding	GO:0008092	Molecular Function	85%
Blast2go	catalytic activity	GO:0003824	Molecular Function	85%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 67 aas, putative chimeric sequence, your sequence is shorter than subject: 128 - 182

Fln protein: MNSGTLEGSIPPASRRDPYEVLGVSRDASDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDTAGFEALEFESMDMEVDLSNLGTVNTIVCGNYLASLVCPSRQQFLLLF*

Protein Length: 129

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTACAGTGCTGTTGGAAGTGGTCTCAGGTGCTTTGAATTATTTTTCCTTTTTGTTTTAGTTTTTCGGCGGCTTTAAAACGGCAAAAAGAATAAAGCCCTCAGGGACTGAAGGTTCCCTAGGGTTATAAGGATCTCTATCATATCTTAATGACAAATGCACAGAGCGCGTGATCGCGTTCCGTCGTGATTTATTACATTAAATGGTTAGACCCCAACCGTATTTGTGTTTTGGGCCGATTGGGGTTTGGTGCTTCAAATTACATGTTAGGGTTTCATTCCATTGCTGAATTTCTAAAGAGAGTGTTTTAGATGGTTGTACTGAGTATTTTCTGAGGGATCATGGATATACTTGGCACGGAATGATGATTGGTTGAAGTGGGCTGTATAAATTTCCAATCTCGTTAATTTAATTTCAGCAGAAAAAAAA_-_ATGAATTCTGGGACATTAGAAGGAAGCATTCCTCCTGCTTCGAGGAGGGATCCGTACGAAGTACTTGGAGTTTCAAGGGATGCATCTGATCAAGAGATAAAGACTGCTTACAGGAAGCTTGCTCTCAAATATCATCCTGACAAAAATGCAAGTAATCCTGAAGCTTCAGAATTGTTTAAAGAGGTTGCATACTCTTACAGCATTCTTTCGGATCCAGAGAAAAGAAGGCAGTATGATACAGCGGGGTTTGAGGCTTTGGAATTCGAAAGCATGGACATGGAGGTTGACCTGTCAAATTTGGGTACTGTGAATACCATTGTTTGCGGCAATTATTTAGCAAGCTTGGTGTGCCCATCAAGACAACAATTTCTGCTACTGTTCTAG___AGGATGCCCTGAATGGAACAGTGACTGTTAGGCCACTACCCCTTGGAAGGCCTACCAGTGATAAGGTAGAAAAACAAGGAGCACACTTTTTTGGTATAACTATTACAGAGCAGCAAGCTGAAGCTGGAATAGTCGTTAGAGTCACCTCACCTGCACAAAGCAAATTCAAGCTGCTTTATTTTGAGCAGGAGGCAAATGGTGGTTATGGGCTAGCACTACAGGAAGACAGTGAAAAGGCCGGTAAAGTTACAGCTGCTGGAATGTACTTCTTACATTATCAGGTTTATCGACTGGATCCAACAGTCAATGCGTTGGCAATGGCCAAGGATCCTGATGCTGCATTTTTCAAGAAGTTAGAAGGTCTCCAACCGTGTGAAATTTCTGAGCTCAAAGCTGGCACTCACATATTTGCAGTTTATGGTGACAATTTTTTTAAGAGTGCTAGCTATACCATCGAGGCTATCTGTGCTCAGTCTTTTGAAGATCAACAGAGAAGCTCAAGGATGTAGAGGCTACA

Fln Alignment:

Contig6018___DPYEVLGVSRDASDQEIKTAYRKLALKYHPDKNASN-PEASELFKEVAYSYSILSDPEKRRQYDTAGFEALE
B8LN93_______________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLK

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
497	87	12			0.992554
499			87	12	0.992554
500	87	12			0.992554
502			87	12	0.992554
510	87			12	0.992554
511		87	12		0.992554
513	87	12			0.992554
514	87			12	0.992554
522		12	87		0.992554
570	90		10		0.90298
574			10	90	0.90298
575			90	10	0.90298
577	11			88	0.923564
740			75	25	0.996473
741	75			25	0.996473
800		44	55		1.0
802		11		88	0.923564
803		44	11	11	1.0
806	11		88		0.923564
807	44	55			1.0
808		88		11	0.923564
810	44			55	1.0
811	11			88	0.923564
812	11		44	11	1.0
813		44	55		1.0
814	44	55			1.0
815	44			44	1.0
817	44			44	1.0
821	44			55	1.0
908		10	90		0.90298
911	90	10			0.90298
914	90			10	0.90298
915	90		10		0.90298
917	90	10			0.90298
919	90			10	0.90298
920	90			10	0.90298
923	90			10	0.90298
928	90			10	0.90298
930	10			90	0.90298
935			10	90	0.90298
937			90	10	0.90298
991		88		11	0.999952
992	76		11	11	0.999894
993		88	11		0.999952
994		88	11		0.999952
997	5	76			1.0
998	82	5		11	0.999919
1000	76	5		5	0.999894
1001	88			11	0.999952
1002	76	11	5	5	0.999894
1003			88	11	0.999952
1006	88	11			0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain