SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene6006

Length: 1446 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene6006

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14554	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	putative transcription factor [Oryza sativa Japonica Group] gb\|ABF99747.1\| acyl-CoA binding family protein, putative, expressed [Oryza sativa Japonica Group]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	acyl- binding protein 4	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	78%
Blast2go	lipid transport	GO:0006869	Biological Process	78%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	78%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg: Separated hits, possible frame ERROR between 319 and 325, Distance to subject end: 150 aas, your sequence is shorter than subject: 482 - 665

Fln protein: VVTLAVTQLLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNSLGNMPS*PWLSLMFVKILEEEDPAWYSKVPESAPEPVVEVEKPSKESASHHDNSVSVRDVAxxxNGSYVETQDKDVILEGLGSVAVYDQWVSLSVTGRQPKARYEHAAAVVQEKMYVFGGNHNGRYLNDMQVLDLKSLTWSKVDTKMASDSSQELLSPCAGHCLIQWGNKILAVAGHTKDPSDVVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLIMFGGEDSKRSLLNDLNILDLETMTWDAVEAVGTPPTPRSDHTATVHANRYLLIFGGGSHSTCFNCLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVSIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVLTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLESPAGANVDTVLPTSNGVRDIDMKIWHFR

Protein Length: 483

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCTTCTATACGGACTTTACCAGCAAGCGACAGTGGGCCCATGTAATGTTTCTAAACCTCGGAGCTGGAACCCCATTGAGCATAGCAAATGGACAAGCTGGAATAGCCTTGGAAATATGCCGTCGTGACCTTGGCTGTCACTCATGTTCGTTAAAATATTGGAGGAGGAAGACCCTGCATGGTATTCAAAGGTACCAGAGTCTGCACCTGAGCCAGTGGTGGAAGTGGAAAAACCATCCAAGGAATCAGCTTCCCATCACGACAATTCTGTTTCGGTTCGTGACGTTGCTGTxxxxxxAAATGGAAGTTATGTAGAGACACAAGATAAGGATGTTATATTGGAAGGCCTGGGATCAGTTGCTGTTTATGACCAGTGGGTTTCACTGTCAGTAACTGGTCGGCAACCAAAAGCCCGCTATGAGCATGCAGCGGCAGTAGTGCAAGAGAAAATGTATGTCTTTGGTGGAAACCACAATGGGCGCTACCTAAATGATATGCAGGTGCTCGATTTGAAATCTTTGACATGGTCCAAAGTGGATACAAAGATGGCATCTGACTCTTCTCAAGAACTTTTATCTCCTTGTGCTGGCCATTGCCTGATTCAATGGGGCAACAAGATTCTAGCTGTTGCTGGACATACAAAGGATCCTTCTGACGTTGTGACAGTTCGATCCTTTGACACAGAATCCTGTACATGGTGTGTACTAAAGTCATATGGAAAAGCTCCGATTGCACGCGGTGGTCAATCTGTCACTCTCGTAGGGTCCAGTTTAATTATGTTTGGTGGTGAGGACTCAAAGAGGAGTCTTCTGAATGATCTGAATATTCTTGACTTGGAAACGATGACTTGGGATGCTGTAGAAGCTGTGGGTACGCCTCCAACACCACGGTCTGATCACACTGCTACAGTACACGCAAATCGGTATCTTTTGATTTTTGGTGGCGGTTCTCATTCCACATGTTTCAATTGTCTTCATGTCCTTGACTTGCAGAGTATGGAATGGTCACGGCCAAAAATGCAAGGCACTTTGCCCACCCCTCGAGCTGGGCATGCAGGTGTCTCAATTGGTGAAAATTGGTATATCGTAGGTGGAGGTGATAACAAGAGTGGTGTCTCAGAGACCATGGTTTTGAATATGTCTACACTTGTCTGGTCCGTTGTAACCACTGTACAAGGACGAGTGCCACTTGCTAGTGAGGGTCTGAGTCTAGTGCTTACTTCAAACAATGGTGAAGATATTCTTGTTGCCTTTGGTGGATACAATGGAAGGTACAGCAATGAGGTACACGTTCTAAAACCTAGTCACAAGGGCATGCTACAGCAAAAGATGCTTGAGTCACCTGCAGGTGCCAACGTTGATACTGTATTGCCCACATCAAATGGGGTCAGGGACATAGATATGAAGATCTGGCACTTTCGC

Fln Alignment:

Contig6006___LLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNSLGNMPS*PWLSLMFVKILEEEDPAWYXXXXXXXXXXXXXXXXXXXXXXXHHDNSVSV-RDVAVxxNGSYVETQDKDVILEGLGSVAVYDQWVSLSVTGRQPKARYEHAAAVVQEKMYVFGGNHNGRYLNDMQVLDLKSLTWSKVDTKMASDSSQELLSPCAGHCLIQWGNKILAVAGHTKDPSDVVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLIMFGGEDSKRSLLNDLNILDLETMTWDAVEAVGTPPTPRSDHTATVHANRYLLIFGGGSHSTCFNCLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVSIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVLTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLESPAGANVDTVLPTSNGVRDID
C0PPX6_______________LLLYGLYQQATVGPCNVSKPRSWNPIEHSKWTSWNNLGNMPSQEAMRL-FVKILEEEDPAWYSKVPESAPEPEVEVEKPSKESAFHHDNSVSVPKDTAIxxNGSFVETQDKDVILEGLGSVAVYDQWVSLSVTGRQLKARYEHAAAVVQEKMYVFGGNHNGRYLNDLQVLDLKSLMWSKVDTKMASDSSQELLSPCAGHCLIQWGNKILAVAGHTKDPSDIVTVRSFDTESCTWCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLNDLNILDLETMTWDAIEAVGTPPSPRSDHTATVHANRYLLIFGGGSHSTCFNDLHVLDLQSMEWSRPKMQGTLPTPRAGHAGVTIGENWYIVGGGDNKSGVSETMVLNMSTLVWSVVTTVQGRVPLASEGLSLVVTSNNGEDILVAFGGYNGRYSNEVHVLKPSHKGMLQQKMLESSAGASVDPVLPTSNGVRDIE

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
765		75		25	0.996473
766		25	75		0.996473
770	25		75		0.996473
771		25		75	0.996473
773	75			25	0.996473
774	75			25	0.996473
775			25	25	0.995533
776			25	75	0.996473
841			16	83	0.994512
847	83	16			0.994512
849			83	16	0.994512
850	83		16		0.994512
851			16	83	0.994512
856	83			16	0.994512
857		16		83	0.994512
859		16		83	0.994512
984	20	80			0.995493
992	80			20	0.995493
996		20		80	0.995493
1236		33		66	0.997452
1239			66	33	0.997452
1240	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain