SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5939

Length: 719 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5939

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16142	6/8
SustainPine v2.0	sp_v2.0_unigene76879	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	nucleic acid binding	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
30		25		75	0.996473
31			25	75	0.996473
33		25	75		0.996473
35			75	25	0.996473
38	75	25			0.996473
39	75	25			0.996473
40			75	25	0.996473
41	75			25	0.996473
42			25	75	0.996473
45	75			25	0.996473
46			25	75	0.996473
48		25	75		0.996473
50		25	75		0.996473
51		75		25	0.996473
52	75	25			0.996473
53	80	20			0.995493
55			80	20	0.995493
57	80		20		0.995493
58	80			20	0.995493
59	80		20		0.995493
60	80			20	0.995493
61	20			60	0.99255
66			20	80	0.995493
68	80	20			0.995493
69		80		20	0.995493
71	80			20	0.995493
72		20	80		0.995493
73	20		80		0.995493
145	83	16			0.994512
146	83		16		0.994512
162	83	16			0.994512
163	83			16	0.994512
164		16	83		0.994512
165	16	83			0.994512
166		12		87	0.992554
169			12	87	0.992554
170	87			12	0.992554
173		12	87		0.992554
178			12	87	0.992554
180	87	12			0.992554
181	87			12	0.992554
183	87			12	0.992554
186	87	12			0.992554
188		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain