SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5931

Length: 573 nt

UniGene Fasta

>uagpf_v2_unigene5931
CGTCGTGACCTTGGCTGTCACTCATGGATATGTCAGTTTCTTTCTCCATCCCAGGCAGCTGTGGTGCAAAATTGCTTTACGCAGAGAAGACAATGGTTCCTTGGTTCTCGGAGTTATGCCATAACACCATTTGATTTAAGGTTTCGCTACTTATTCTTGCCTGAAAATAAGAACTGAGATATGGTTTGAGCGAAGTTCTGTTGTTTGGATAGTGTTCACTGTTCAACTTTCTTCTCTGCATTAATCCCTTGAAGAAACAATCACGAAAAAAGTGGAGATCTTTGAACTAGCAATTTAAAACAAGGAGGCTATGGACAGGACAGGATGTGATAAATCTTGATCACAAGTTTCCATTTGTGGTGATCCACTGCCAAGTTCGCAGTGACGGTGTGATGCAGAGAAGCAGGGATGAATAGATTGGGATGGTTTTCTTTCTTCTTGGTATCTGAGCAAAGGCATGATAGGCTCTTTTGGTGCCTGTTCTTGGCTATCTGTATGTATCAACTTCAGATGTAGCTGTAGCCGTTTGTATAAATTCTGTTTGTTTGTAATACATGTTGATGGATGTACTTT

Ace file of the UniGene uagpf_v2_unigene5931

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2108	4/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF547 domain containing protein	-	-	1.0e-14	28%
FL-Next	tr=Electron transporter, putative; Ricinus communis (Castor bean).	-	-	0.0	54%
Blast2go	ternary complex factor mip1-like	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	78%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	78%
Blast2go	vacuole	GO:0005773	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF547	IPR006869	-	0.0	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RR11

Fln msg: your sequence is shorter than subject: 59 - 589

Fln protein: RRDLGCHSWICQFLSPSQAAVVQNCFTQRRQWFLGSRSYAITPFDLRFRYLFLPENKN*

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGATATGTCAGTTTCTTTCTCCATCCCAGGCAGCTGTGGTGCAAAATTGCTTTACGCAGAGAAGACAATGGTTCCTTGGTTCTCGGAGTTATGCCATAACACCATTTGATTTAAGGTTTCGCTACTTATTCTTGCCTGAAAATAAGAACTGA___GATATGGTTTGAGCGAAGTTCTGTTGTTTGGATAGTGTTCACTGTTCAACTTTCTTCTCTGCATTAATCCCTTGAAGAAACAATCACGAAAAAAGTGGAGATCTTTGAACTAGCAATTTAAAACAAGGAGGCTATGGACAGGACAGGATGTGATAAATCTTGATCACAAGTTTCCATTTGTGGTGATCCACTGCCAAGTTCGCAGTGACGGTGTGATGCAGAGAAGCAGGGATGAATAGATTGGGATGGTTTTCTTTCTTCTTGGTATCTGAGCAAAGGCATGATAGGCTCTTTTGGTGCCTGTTCTTGGCTATCTGTATGTATCAACTTCAGATGTAGCTGTAGCCGTTTGTATAAATTCTGTTTGTTTGTAATACATGTTGATGGATGTACTTT

Fln Alignment:

Contig5931___DLGCHSWICQFLSPSQAAVVQNCFTQRRQWFLGSRSYAITPFDLRFRYLFL
B9RR11_______________DLQLPEWICQFLSPEQAAMVKDCLSNHKWRLLGARSFSVLPFDSRFRFLFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain