SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5921

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene5921
CGTCGTGACCTTGGCTGTCACTCAATTAACTTCCAGTGTTAAAGACAGGCTTAGGCCAGCCTTGTATTATCTGCTGAGATTGGGATTCCCAAACATACGTCTTGTAGATTGTTCAAATACCATTTTATTGGTTTCCAGTGTGGAAAATACCCTTATACCTAAGCTCGAGTATTTGAAAAGTCTGGGCTTTTCACACAGGGATGCTGTGAA

Ace file of the UniGene uagpf_v2_unigene5921

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7858	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	mTERF-like protein [Brassica napus]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	mterf-like protein	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HGB3

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 69 - 313

Fln protein: VVTLAVTQLTSSVKDRLRPALYYLLRLGFPNIRLVDCSNTILLVSSVENTLIPKLEYLKSLGFSHRDAV

Protein Length: 70

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAACTTCCAGTGTTAAAGACAGGCTTAGGCCAGCCTTGTATTATCTGCTGAGATTGGGATTCCCAAACATACGTCTTGTAGATTGTTCAAATACCATTTTATTGGTTTCCAGTGTGGAAAATACCCTTATACCTAAGCTCGAGTATTTGAAAAGTCTGGGCTTTTCACACAGGGATGCTGTGAA

Fln Alignment:

Contig5921___LTSSVKDXXXXXXXXXXXXGFPNIRLVDCSNTILLVSSVENTLIPKLEYLKSLGFSHRDAV
F6HGB3_______________LLCSVDDQLRPTFYFLKKLGFAGPHAITCQNTLLLVSSVEDTLVPKLEYLQNLGFSYKEVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain