SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5917

Length: 1298 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5917

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10116	31/36
SustainPine v2.0	sp_v2.0_unigene66041	1/36

Source	Descriptions	Term	Type	Identity
AutoFact	Calcineurin B-like protein 01 n=1 Tax=Vitis vinifera RepID=C4P7Y8_VITVI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	calcineurin b-like protein 1	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	90%
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	90%
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	stomatal movement	GO:0010118	Biological Process	90%
Blast2go	potassium ion import	GO:0010107	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	90%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	90%
Blast2go	kinase binding	GO:0019900	Molecular Function	90%
Blast2go	cytoplasm	GO:0005737	Cellular Component	90%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3		IPR015757	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Recoverin	IPR001125	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN8

Fln msg:

Fln protein: MGCFNSKLTKHSPGYEDPVKLAAETAFSVSEVEALYELVKKTSTHRSDHGRKNKEEFQLALFKNSKKENLFADRVFELFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCSGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEADGDRDGRIDRDEWQQFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDIAT*

Protein Length: 215

Fln nts: ACTGTCCTGATCTTCGTCGCCTTTGTTTCTATGAAAAGTTAAGTTACTGAAGCCAGTCAGTGCAGGAGGAATACTTTTCCAATTAAATAATATTCGCAGAGCTTTTGAACTCATGCGGGATTCAAGCGGCTCTTGAACCAAATAGATCACATGTTATTCTTCTGCAATGCTGACGATTCGCACGGCTTTTCCAGGGCTGCCATGAAACGAGCTAACAAGCCAGTGTGGTCTACAGAGGTGGAAAAGCTCCAAAGTCTTCTACCCCAAAGTCACTCTAATTTGCCAGATCTTGTGTCTTAGTCTGAGCTATTTGTCAATAA_-_ATGGGTTGCTTCAATTCAAAGTTAACTAAGCATTCTCCAGGGTATGAAGACCCTGTAAAGCTTGCAGCAGAGACAGCATTTAGTGTAAGCGAGGTTGAAGCTTTGTATGAGCTCGTGAAAAAGACTAGCACCCATCGTAGTGACCATGGCCGCAAAAACAAGGAGGAGTTTCAGCTGGCATTATTTAAGAACAGCAAGAAGGAGAACCTCTTTGCTGATCGGGTCTTTGAGTTATTTGATGTAAAGAGGAAAGGAGTTATTGATTTTGGTGACTTTGTTCGATCTCTTAGCGTTTTCCATCCAAATGCACCTCAAGAAGATAAAATTGACTTTGCATTCAAGCTGTATGATTTGCAGTGCAGTGGTTATATCGAACGTGAAGAGGTGAAACAAATGTTAATAGCACTTTTATGTGAGTCAGAAATGAAATTAGCTGATGAGGTCATTGAGACGATTCTTGACAAGACATTCCAAGAAGCTGATGGAGACCGAGATGGGCGAATTGATCGAGATGAATGGCAACAATTTGTATCCCATAATCCTTCATTAATGAAGATAATGACTCTTCCTTATTTGAAGGATATCACCACAACATTTCCAAGTTTTGTATTTAATTCAGAAGTGGATGACATTGCCACTTGA___GTCTGCCATGCCCATTCATGTTAATGAAACAAGCGGTCAAAGTGGTAAAACTCAGCATTTGTTTGTTTGCTTTAGTTATAAGAGACAGTTTCAAGATCACTTAAGGTAAAGGGCACTTTCCAAAGATCCTTAGGAAGTGGTCAATAAATATGTGTACATGACAGGTTCTTAAAAGATTTAAATATATTAGGTGTTAAGTACTATAATTTTACTGTTTTGTGTTAATTTCATCCTACTGATTCTTGCCATGGAAAGAAATTGTGCACCTTCACAGAATTCATGCGTATATCTATTAAGGTGGCAGATATCGCTTTATGTCCAGTAGTTTTTTCCTTT

Fln Alignment:

Contig5917___MGCFNSKLTKHSPGYEDPVKLAAETAFSVSEVEALYELVKKTSTHRSDHGRKNKEEFQLALFKNSKKENLFADRVFELFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCSGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEAXXXXXXXXXXXEWQQFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDIAT
B8LKN8_______________MGCFNSKFTKHSPGYEDPVKLAAETAFSVSEVEALYELFKKISSSVIDDGLINKEEFQLALFKNSKKENLFADRVFDLFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCTGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEADVDQDGRIDRDEWQKFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDIAT

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
284	75	25			0.996473
285		25		75	0.996473
289		75	25		0.996473
291	75			25	0.996473
296	25			75	0.996473
297		25		75	0.996473
298			75	25	0.996473
299		25		75	0.996473
300	25		75		0.996473
566		40		60	1.0
569	60	40			1.0
570	60		40		1.0
571	60			40	1.0
574		40	60		1.0
575		40	60		1.0
576	60			40	1.0
577	60			40	1.0
578	60		40		1.0
580		40	60		1.0
581	60			40	1.0
584		40		60	1.0
587	40			60	1.0
771	86		13		1.0
773		13		86	1.0
775	86			13	1.0
779		13	86		1.0
780	86			13	1.0
782			13	86	1.0
783		86	13		1.0
784		13		86	1.0
787	86			13	1.0
790	86	13			1.0
791			86	13	1.0
792	86	13			1.0
793	13	86			1.0
927	90			10	0.90298
930	10			90	0.90298
931		10		90	0.90298
933		10	90		0.90298
934	10			90	0.90298
940	90	10			0.90298
941			10	90	0.90298
944	90			10	0.90298
947	90	10			0.90298
948			90	10	0.90298
952	90	10			0.90298
955	90			10	0.90298
958		10		90	0.90298
1009	88	11			0.923564
1012		11	88		0.923564
1016	87		12		0.992554
1018	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain