SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5911

Length: 905 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5911

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2489	24/30
SustainPine v2.0	sp_v2.0_unigene61694	5/30

Source	Descriptions	Term	Type	Identity
AutoFact	PAF1 complex component n=2 Tax=Populus trichocarpa RepID=B9HYK9_POPTR	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	rna polymerase-associated protein rtf1 homolog	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	0.0	66%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Plus-3	IPR004343	-	0.0	-
Sma3	Plus-3 domain, subgroup	IPR018144	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 93)

Position	A %	C %	G %	T %	Probability
37	66			33	0.997452
38		33	66		0.997452
43	66	33			0.997452
44		33	66		0.997452
45		66		33	0.997452
46	66			33	0.997452
58	33		66		0.997452
111	33		66		0.997452
118	33		66		0.997452
135		25		75	0.996473
136	25		75		0.996473
141	75			25	0.996473
142		75	25		0.996473
143	75		25		0.996473
144	75	25			0.996473
145	75	25			0.996473
146			75	25	0.996473
147	75			25	0.996473
151	75			25	0.996473
159			80	20	0.995493
160		80		20	0.995493
161	20	80			0.995493
162	80		20		0.995493
163	80			20	0.995493
164	80		20		0.995493
165	20		80		0.995493
166		20		80	0.995493
167	80	20			0.995493
168			80	20	0.995493
169	80			20	0.995493
172	80	20			0.995493
173	80			20	0.995493
175		80		20	0.995493
179	80	20			0.995493
180			80	20	0.995493
182	83	16			0.994512
183	83		16		0.994512
185	66	16	16		0.988813
187	66			16	0.988813
188	83		16		0.994512
192		16	83		0.994512
193		83		16	0.994512
196	83		16		0.994512
197		16	83		0.994512
198			83	16	0.994512
199	83		16		0.994512
200		16		83	0.994512
201		16	83		0.994512
204		16	83		0.994512
205	16		83		0.994512
219	83		16		0.994512
220		83		16	0.994512
221			16	83	0.994512
321			87	12	0.992554
324		88	11		0.923564
325		88		11	0.923564
327			11	88	0.923564
329			11	88	0.923564
331		11	88		0.923564
335			11	88	0.923564
336			11	88	0.923564
337	88	11			0.923564
340			88	11	0.923564
343	90	10			0.90298
344		10	90		0.90298
345	80			20	0.999996
350	90	10			0.90298
351			90	10	0.90298
352	90			10	0.90298
353	90		10		0.90298
355	90	10			0.90298
358		10	90		0.90298
360		10	90		0.90298
365		90		10	0.90298
371		10	90		0.90298
372	84	15			0.999986
377	84		15		0.999986
378	84			15	0.999986
380	15			84	0.999986
381		15		84	0.999986
383		84		15	0.999986
385	84		15		0.999986
388	84			15	0.999986
389	84		15		0.999986
391		15	84		0.999986
473	41		8	41	1.0
498			44	55	1.0
673	58		41		1.0
714		14		85	0.993533
715			14	85	0.993533
716	85	14			0.993533
824		75		25	0.996473
826	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain