SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5907

Length: 480 nt

UniGene Fasta

>uagpf_v2_unigene5907
GTTTGGATGTTGAGGGAAGCCATGTCAGCACAGTGGTTGCAGGGACTGTTGGATATGTTCCACCGGAGTATTCACAGTCTTGGAGAGCCACCACCAAGGGGGATGTTTACAGTTATGGGGTGGTTTTGCTTGAGCTGATCACTGGGAAAAGGCCACTCTCTGTGAGTGAGAACAGTGATGGTAATCTGGTTGAATGGGTAAATATGCTGATTTCAGATGGCCGGGCAGCCGAGGCTATCGATCCACTTTTGCTTCTCGAGCAAGGTGAAGGGAGCAGTCAATCATCAACATTAACGTATCCATCTCCATGTTCATCTATAAGTTCGTCCCCTCCTTCTGGGCCCGTTTCTGCCAGGTATCTCCAGCAAAATCAGCTCATACACTTTCTTCATTTGGGCCACATATGTACAGCTGAATCACCAAACCGGAGACCCAACATAAAAACATGTTCTAACCATACTTCAGTCCATGGGGGATGCA

Ace file of the UniGene uagpf_v2_unigene5907

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9810	7/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CLL4A clavata1-like receptor S/T protein kinase protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SDH6_PHYPA	-	-	3.0e-19	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	extra sporogenous cells	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	cellular developmental process	GO:0048869	Biological Process	60%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	60%
Blast2go	binding	GO:0005488	Molecular Function	60%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	60%
Blast2go	membrane	GO:0016020	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: STOP codon was not found. Distance to subject end: 24 aas, your sequence is shorter than subject: 159 - 360

Fln protein: LDVEGSHVSTVVAGTVGYVPPEYSQSWRATTKGDVYSYGVVLLELITGKRPLSVSENSDGNLVEWVNMLISDGRAAEAIDPLLLLEQGEGSSQSSTLTYPSPCSSISSSPPSGPVSARYLQQNQLIHFLHLGHICTAESPNRRPNIKTCSNHTSVHGGC

Protein Length: 160

Fln nts: GTTTGGATGTTGAGGGAAGCCATGTCAGCACAGTGGTTGCAGGGACTGTTGGATATGTTCCACCGGAGTATTCACAGTCTTGGAGAGCCACCACCAAGGGGGATGTTTACAGTTATGGGGTGGTTTTGCTTGAGCTGATCACTGGGAAAAGGCCACTCTCTGTGAGTGAGAACAGTGATGGTAATCTGGTTGAATGGGTAAATATGCTGATTTCAGATGGCCGGGCAGCCGAGGCTATCGATCCACTTTTGCTTCTCGAGCAAGGTGAAGGGAGCAGTCAATCATCAACATTAACGTATCCATCTCCATGTTCATCTATAAGTTCGTCCCCTCCTTCTGGGCCCGTTTCTGCCAGGTATCTCCAGCAAAATCAGCTCATACACTTTCTTCATTTGGGCCACATATGTACAGCTGAATCACCAAACCGGAGACCCAACATAAAAACATGTTCTAACCATACTTCAGTCCATGGGGGATGCA

Fln Alignment:

Contig5907___LDVEGSHVSTVVAGTVGYVPPEYSQSWRATTKGDVYSYGVVLLELITGKRPLSVSENSDG-NLVEWVNMLISDGRAAEAIDPLLL
B8LPH3_______________INPDQTHVSTIVAGTFGYLAPEYVETGRATEKGDVYSYGVVLLELITGKRPTDEAFVEKGNNIVTWIRALVEDGCEEHAFDPDLV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
188		16	83		0.994512
194	83	16			0.994512
196			83	16	0.994512
200	66	16	16		0.988813
201	83			16	0.994512
202	83		16		0.994512
205		16		83	0.994512
206	16		83		0.994512
209		16	83		0.994512
344		75		25	0.996473
362		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain