SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5885

Length: 1137 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5885

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6723	24/28
SustainPine v2.0	sp_v2.0_unigene9761	4/28

Source	Descriptions	Term	Type	Identity
AutoFact	Putative zinc transporter n=1 Tax=Solanum lycopersicum RepID=A1YIQ6_SOLLC	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	zip transporter	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	74%
Blast2go	transmembrane transport	GO:0055085	Biological Process	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Transposase, IS4-like	IPR002559	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZA5

Fln msg: Overlapping hits, possible frame ERROR between 219 and 219, your sequence is shorter than subject: 286 - 358

Fln protein: YFYRWNESFLLLGTQFAAGVFLGTAWMHFLGDSASTFAELTDKTYPFAFMLCTAGYLITMLADLTVAWVYQKxxGSNVTVIPLQRKAESSVPTHTGETPLSSQDLQTPPQTAITVNTVTAASLVKKTSIGDSLLLVLALCFHSVFEGIAIGVAATEADAWRALWTVSLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPIGVAIGILIDATTEGRVADWIYAISMGFACGVFVYVAINHLLLKGIIYNPQSRIPYDTPFYKYMALILGAALIAVVMTWD*

Protein Length: 287

Fln nts: TATTTTTACAGATGGAACGAGAGTTTTCTTTTGCTGGGAACTCAGTTCGCGGCTGGTGTCTTCCTGGGGACGGCTTGGATGCATTTTCTCGGCGATTCCGCTTCAACATTTGCAGAGTTGACGGACAAGACGTATCCTTTTGCATTCATGCTCTGCACTGCAGGCTACCTGATTACCATGCTCGCAGACCTCACCGTCGCTTGGGTGTATCAGAAAxxxxxxGGATCAAATGTCACTGTAATTCCTCTTCAAAGAAAAGCCGAAAGCAGTGTACCGACACATACTGGCGAGACACCACTCAGCTCGCAGGACCTCCAAACACCTCCACAGACAGCTATAACAGTGAACACGGTGACGGCGGCCTCATTGGTAAAGAAGACCTCCATTGGAGACAGTTTACTTCTCGTACTCGCTCTGTGCTTCCATTCTGTCTTCGAAGGGATCGCCATTGGTGTTGCAGCAACGGAGGCTGATGCGTGGAGAGCTCTGTGGACGGTGTCTTTACATAAAATATTCGCTGCAATAGCGATGGGCATAGCACTTTTGCGCATAATTCCCAACAGGCCTTTCCTCTCCTGTGCAGCTTATGCCTTCGCCTTTGCGATTTCGAGCCCCATTGGAGTTGCCATTGGAATACTTATCGATGCCACTACAGAAGGCCGTGTGGCAGACTGGATTTACGCAATCTCGATGGGTTTTGCGTGCGGTGTTTTCGTTTACGTTGCCATCAATCATCTTCTGTTGAAAGGAATAATATACAACCCGCAAAGCCGTATCCCCTATGACACACCATTTTACAAATATATGGCCCTAATACTTGGAGCTGCACTGATTGCGGTGGTGATGACTTGGGACTGATTGCACACATTTTGTCACCATGGCCGATGCTCAGTGGTATCAGCTACACTGCCTATTCAATTGACTTTTTATATTAAGAAATTACAATCCACAAACTACGTTGTCAATTCATAATCACATCGCTTTCTACATGTTTTGGAGCAATTTAATTTAGTGATTAACAATAAAGTGTGCATCTCCAAGCCACAGTGCCTAAACTGTAATGGCCACTACCAAACTCCTCTTATCTGGAAATTGGTCTTCATTAGTTATTTTTTCCAATGCCTTCACCACGATGTCT

Fln Alignment:

Contig5885___YFYRWNESFLLLGTQFAAGVFLGTAWMHFLGDSASTFAELTDKTYPFAFMLCTAGYLITMLADLTVAWVYQKQDGSNVTVIPLQRKA-----ESSVPTHTGETPLSSQDLQTPPQTAITVNTVTAASLVKKTSIGDSLLLVLALCFHSVFEGIAIGVAATEADAWRALWTVSLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPIGVAIGILIDATTEGRVADWIYAISMGFACGVFVYVAINHLLLKGIIYNPQSR-IPYDTPFYKYMXXXXXXXXXXVVMTWD
A9NZA5_______________YFYRWNESFLLLGTQFAAGVFLGTAWMHFLSDSAETFADLTDKTYPFAFMLCTAGYLVTMLGDLIVAWVYQKQDGPNIAAIPLQRKADIRSTESGAPTQTGEASLNCQTLQTPPHSNGESSMVKAASLVKKTSMGDSLLLILALCFHSVFEGIAIGVAATKADAWRALWTVCLHKIFAAIAMGIALLRIIPNRPFLSCAAYAFAFAISSPVGVAIGILIDATTQGHVADWIYAISMGFACGVFVYVAINHLLLKGLMYNPKNRAIPFDKPIFKYLAVLTGAGLIAVVMIWD

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
144	75		25		0.996473
169		75		25	0.996473
174		16		83	0.994512
186	85	14			0.993533
188	83			16	0.994512
190		83	16		0.994512
192		83	16		0.994512
196			83	16	0.994512
198		83	16		0.994512
203		16	83		0.994512
204	16		83		0.994512
205		16	83		0.994512
410			25	75	0.996473
411		83		16	0.994512
413	16	66			0.988813
414		16		83	0.994512
417			83	16	0.994512
418	16		16	66	0.988813
419		16	83		0.994512
422			16	83	0.994512
423		66	16	16	0.988813
425	83			16	0.994512
426		16	16	66	0.988813
429	16			66	0.988813
430	16	16	66		0.988813
477	12		87		0.992554
478		12		87	0.992554
479		25	62	12	1.0
480		12	87		0.992554
481	75			25	1.0
484		25	75		1.0
487		75		25	1.0
488			25	75	1.0
492		25	75		1.0
495			71	14	0.984337
496		14	71	14	0.984337
497	14	14		71	0.984337
498	14		85		0.993533
550	85		14		0.993533
552	85		14		0.993533
555		14		85	0.993533
557		85		14	0.993533
558		85		14	0.993533
559	85		14		0.993533
560	85		14		0.993533
562	85			14	0.993533
564			85	14	0.993533
568	14			85	0.993533
598			12	87	0.992554
600		12		87	0.992554
602		87		12	0.992554
605		12		87	0.992554
608		88	11		0.923564
610	77	11		11	0.968132
612		77		22	0.999999
613		88	11		0.923564
614	22	77			0.999999
616	77	11		11	0.968132
617		11		88	0.923564
618	11			88	0.923564
623		11		88	0.923564
626		88		11	0.923564
630		11		88	0.923564
631	11		88		0.923564
632		11	88		0.923564
645		10		90	0.90298
647		90		10	0.90298
649	90		10		0.90298
650		90		10	0.90298
651			10	90	0.90298
655		10	90		0.90298
656	90			10	0.90298
657	90			10	0.90298
661		90		10	0.90298
664		10	90		0.90298
665	10			90	0.90298
666		10	90		0.90298
667			90	10	0.90298
669	84	15			0.999986
671	84			15	0.999986
673			15	84	0.999986
674			84	15	0.999986
677		15		84	0.999986
678		15		84	0.999986
680	84			15	0.999986
681		84	15		0.999986
827		57	42		1.0
913	75	16			0.99999
917	75		25		1.0
918	75	25			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain