SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5866

Length: 424 nt

UniGene Fasta

>uagpf_v2_unigene5866
GCGTGATCTAGCTGTTGAACTAACAAAAGATACATCTACAAGTTTGGAGAAAGAGGTTATTTCTACCTTTCTCAAAAGGGCTTTTCCAAGACTTGATGCATGGTTTCATTGGTTTAATACCACTCAAACAGGGAAGGATCCCACTAGCTATTTTTGGCATGGAAGAGATAATGTGACAGACCGGGAGCTAAACCCAAAGAGTCTTTCTTCAGGTTTAGATGACTACCCACGTGCTTCGCACCCAAGCGAAGATGAGCGCCATGTAGACCTACGATGTTGGATGGCTCTTGCAGCAGACTGCATGGATTTAATTTCCAAGCAAGTTGGTGCAGTGAATAATAAGTACTCCACAACTGCAAAACAACTTTCAGATCTTAAGCTGCTGAATCAAATGCACTATGACAATATTCTGGATGTACCATGA

Ace file of the UniGene uagpf_v2_unigene5866

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26493	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	glucosidase 1 [Arabidopsis thaliana] gb\|AEE34653.1\| glucosidase 1 [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	62%
Blast2go	mannosyl-oligosaccharide glucosidase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.2.1.2-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	73%
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	73%
Blast2go	alpha-glucosidase activity	GO:0004558	Molecular Function	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 63	IPR004888	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KAP2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 198 aas, your sequence is shorter than subject: 141 - 782

Fln protein: RDLAVELTKDTSTSLEKEVISTFLKRAFPRLDAWFHWFNTTQTGKDPTSYFWHGRDNVTDRELNPKSLSSGLDDYPRASHPSEDERHVDLRCWMALAADCMDLISKQVGAVNNKYSTTAKQLSDLKLLNQMHYDNILDVP*

Protein Length: 142

Fln nts: GCGTGATCTAGCTGTTGAACTAACAAAAGATACATCTACAAGTTTGGAGAAAGAGGTTATTTCTACCTTTCTCAAAAGGGCTTTTCCAAGACTTGATGCATGGTTTCATTGGTTTAATACCACTCAAACAGGGAAGGATCCCACTAGCTATTTTTGGCATGGAAGAGATAATGTGACAGACCGGGAGCTAAACCCAAAGAGTCTTTCTTCAGGTTTAGATGACTACCCACGTGCTTCGCACCCAAGCGAAGATGAGCGCCATGTAGACCTACGATGTTGGATGGCTCTTGCAGCAGACTGCATGGATTTAATTTCCAAGCAAGTTGGTGCAGTGAATAATAAGTACTCCACAACTGCAAAACAACTTTCAGATCTTAAGCTGCTGAATCAAATGCACTATGACAATATTCTGGATGTACCATGA

Fln Alignment:

Contig5866___RDLAVELTKDTSTSLEKEVISTFLKRAFPRLDAWFHWFNTTQTGKDPTSYFWHGRDNVTDRELNPKSLSSGLDDYPRASHPSEDERHVDLRCWMALAADCMDLISKQVG----AVNNKYSTTAKQLSDLKLLNQMHYD
D7KAP2_______________RDLINGIRTEKFSKAERDEVLSFLDRAFVRLDAWFKWFNTSQIGKEKGSYYWHGRDNITNKELNPQSLSSGFDDYPRASHPSEDERHVDLRCWMYLAADCMNSIQEFMGKKDRLVTEDYSSIAKLLSDFNLLNQMHYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain