SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5841

Length: 422 nt

UniGene Fasta

>uagpf_v2_unigene5841
CGTCGTGACCTTGGCTGTCACTCAGTTGATATACACTGGCCATGGTGGAAATAACTATCGTGGGGACAAAAGGCAGAACAAACACCAGAAACTTGAACGCGGAAACGTGGCTCTTAAGAACAGCATAGACAGGAAGACACCCGTGAGAGTTATCCGTGGATACAAGCAAAAGAATACTGGAATTCATGAAAACAGAAAAGCCACCGTCAATGTAATATATACATATGATGGCCTTTATGATGTGCAAAAATACTGGCTTGATAAAGGGGCATCTGGATACTTAGTATTCAAATTCCAGTTAAAAAGACAGCCTGGTCAACCAGAGCTGGGCTTGAAGGCAGTGCAATTTTGAGGCTGGTGCAACCTCTAACTTGGTGGAAGATGGGGGGATTCACTATTGATGCAGCAGAGTGTGGAAACGT

Ace file of the UniGene uagpf_v2_unigene5841

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26809	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain histone methyltransferase SUVH4 [Arabidopsis thaliana]	-	-	5.0e-22	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	histone-lysine n- h3 lysine-9 specific suvh4-like	-	-	5.01639e-29	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	histone H3-K9 methylation	GO:0051567	Biological Process	5.01639e-29	66%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Pre-SET domain	IPR007728	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 371 aas, your sequence is shorter than subject: 117 - 830

Fln protein: VVTLAVTQLIYTGHGGNNYRGDKRQNKHQKLERGNVALKNSIDRKTPVRVIRGYKQKNTGIHENRKATVNVIYTYDGLYDVQKYWLDKGASGYLVFKFQLKRQPGQPELGLKAVQF*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGATATACACTGGCCATGGTGGAAATAACTATCGTGGGGACAAAAGGCAGAACAAACACCAGAAACTTGAACGCGGAAACGTGGCTCTTAAGAACAGCATAGACAGGAAGACACCCGTGAGAGTTATCCGTGGATACAAGCAAAAGAATACTGGAATTCATGAAAACAGAAAAGCCACCGTCAATGTAATATATACATATGATGGCCTTTATGATGTGCAAAAATACTGGCTTGATAAAGGGGCATCTGGATACTTAGTATTCAAATTCCAGTTAAAAAGACAGCCTGGTCAACCAGAGCTGGGCTTGAAGGCAGTGCAATTTTGAGGCTGGTGCAACCTCTAACTTGGTGGAAGATGGGGGGATTCACTATTGATGCAGCAGAGTGTGGAAACGT

Fln Alignment:

Contig5841___IYTGHGGNNYRGDKRQNKHQ----KLERGNVALKNSIDRKTPVRVIRGYKQKNTGIHENRKATVNVIYTYDGLYDVQKYWLDKGASGYLVFKFQLKRQPGQP
B8LQP3_______________LYTGSGGRDLSGNKRTNKEQSFDQKFDKSNEALRVSCKMGYPLRVVRSHKEKRSSYAPEGGV------RYDGIYRIEKCWRKKGIQGFKVCRYLFVRCDNEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain