SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5819

Length: 337 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene5819
CGTCGTGACCTTGGCTGTCACTCATCTCTTATTTGGTGCAGTTGGTACCTTTATATCGTCGTGACCTTGGCTGTCACTCAAGTCTTTATCCTACGGAAATTTGATGTTGGTTCTTTGGACATAGGGGATTACCTAGCCATTGGGACAATCTTCTCTGCCACAGATTCTGTTTGCACTCTTCAGGTTCTTAACCAGGATGAGACACCCTTGCTTTATAGTCTAGTGTTTGGGGAGGGTGTTGTCAACGATGCCACATCTATTGTGCTTTTTAATGCGGTTCATAACTTTGATCTCAGCAACATGGATGCAATTACAGCGCTTAAATTAATTGGCTAAC

Ace file of the UniGene uagpf_v2_unigene5819 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene390	3/5
SustainPine v2.0	sp_v2.0_unigene73917	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium/hydrogen exchanger n=1 Tax=Picea sitchensis RepID=C0PSW3_PICSI	-	-	71%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	na+ h+ antiporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	regulation of pH	GO:0006885	Biological Process	82%
Blast2go	sodium ion transport	GO:0006814	Biological Process	82%
Blast2go	sodium:hydrogen antiporter activity	GO:0015385	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Na+/H+ exchanger	IPR004709	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR018406	-	-
Sma3		IPR018407	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSW3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 324 aas, your sequence is shorter than subject: 112 - 552

Fln protein: RRDLGCHSSLIWCSWYLYIVVTLAVTQVFILRKFDVGSLDIGDYLAIGTIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFNAVHNFDLSNMDAITALKLIG*

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCTTATTTGGTGCAGTTGGTACCTTTATATCGTCGTGACCTTGGCTGTCACTCAAGTCTTTATCCTACGGAAATTTGATGTTGGTTCTTTGGACATAGGGGATTACCTAGCCATTGGGACAATCTTCTCTGCCACAGATTCTGTTTGCACTCTTCAGGTTCTTAACCAGGATGAGACACCCTTGCTTTATAGTCTAGTGTTTGGGGAGGGTGTTGTCAACGATGCCACATCTATTGTGCTTTTTAATGCGGTTCATAACTTTGATCTCAGCAACATGGATGCAATTACAGCGCTTAAATTAATTGGCTAAC

Fln Alignment:

Contig5819___VFILRKFDVGSLDIGDYLAIGTIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSIVLFNAVHNFDLSNMDAITALKLIG
C0PSW3_______________MLLFKKFDIGPFEIGDYLAIGTIFSATDSVCTLQILSQDETPLLYSLVFGEGVVNDATSIVLFNAVHNFDLTHIDGSTALQLFG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
258			20	80	0.995493
259		20	80		0.995493
261		20	80		0.995493
262		20		80	0.995493
263			80	20	0.995493
269			80	20	0.995493
270	20	80			0.995493
274			80	20	0.995493
276	20			80	0.995493
277		75		25	0.996473
279	25	75			0.996473
280	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain