SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5802

Length: 896 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5802

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5311	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	50S ribosomal protein L9, chloroplastic n=1 Tax=Pisum sativum RepID=RK9_PEA	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	50s ribosomal protein l9	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	78%
Blast2go	translation	GO:0006412	Biological Process	78%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	78%
Blast2go	rRNA binding	GO:0019843	Molecular Function	78%
Blast2go	plastid large ribosomal subunit	GO:0000311	Cellular Component	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L9	IPR000244	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
499		33		66	0.997452
501		33		66	0.997452
550		75	25		0.996473
560	80		20		0.995493
561		80		20	0.995493
562	80	20			0.995493
564		20	80		0.995493
565	80			20	0.995493
567	20	80			0.995493
578	80			20	0.995493
579	40	60			1.0
580			20	80	0.995493
581	80	20			0.995493
607	80	20			0.995493
608			20	80	0.995493
609	80			20	0.995493
610	80	20			0.995493
612		80		20	0.995493
617		20		80	0.995493
621		80	20		0.995493
622	80		20		0.995493
625	80		20		0.995493
627	20			80	0.995493
629		80		20	0.995493
631	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain