SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5768

Length: 925 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5768

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15958	25/26
SustainPine v2.0	sp_v2.0_unigene79172	1/26

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=2 Tax=Picea sitchensis RepID=B8LNV7_PICSI	-	-	94%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	adp-glucose pyrophosphorylase small subunit	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	starch metabolic process	GO:0005982	Biological Process	92%
Blast2go	biosynthetic process	GO:0009058	Biological Process	92%
Blast2go	transferase activity	GO:0016740	Molecular Function	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	-
Sma3	Glucose-1-phosphate adenylyltransferase	IPR011831	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPY4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 240 aas, your sequence is shorter than subject: 267 - 526

Fln protein: MAGVIAAGVANLNVLGRETAEFTSFRPVFLRGNSQGLSSASSLCDYRILADSKRKKHGIFRKQNINRSTVVSPRAVSDTFSELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYASNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKINDEGRNH*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTAAAGAGTCTTTACGCCATTGAATTTCGGGGAATTCAATACAGACGAA_-_ATGGCTGGCGTTATAGCCGCAGGAGTTGCAAATTTGAACGTTCTGGGCCGAGAAACTGCCGAGTTCACTTCGTTCAGGCCGGTATTTCTTCGAGGAAATTCTCAGGGACTCTCTTCGGCCTCTTCTTTGTGTGATTACAGAATTTTGGCGGATTCCAAGCGGAAGAAGCATGGGATTTTCAGGAAGCAGAATATTAATAGAAGCACAGTCGTTTCTCCACGGGCGGTTTCTGATACCTTCAGTGAACTGACCTGTTTAGATCCGGTCGCGAGTCGGAGTGTGCTGGGCATTATCCTAGGAGGTGGAGCTGGGACTCGTCTTTATCCGCTGACTAAGAAGAGAGCGAAACCAGCTGTTCCTTTGGGTGCCAATTATAGGCTGATCGATATCCCTGTTAGTAATTGCATAAATAGTAATATCTCTAAGATCTATGTTCTTACCCAGTTCAACTCGGCTTCTCTCAACCGTCATCTTTCACGGGCCTATGCAAGCAACATGGGCAGCTACAAGGATGAAGGATTTGTGGAAGTACTTGCCGCTCAGCAAAGCCCTGAAAATCCAAATTGGTTCCAGGGAACAGCAGATGCTGTGAGACAGTACTTGTGGCTTTTTGAGGAGCAACAAGTAATGGAATTTCTGATTCTAGCTGGAGATCATCTCTATCGTATGGATTACCAGAAATTCATTCAGGCTCACAGGGAAACCAATGCAGATATCACCGTGGCAGCTTTACCCATGGATGAGAAACGAGCAACAGCTTTTGGTCTAATGAAGATTAATGATGAAGGCCGCAATCATTGAATTTTCAGAGAAACCCAAAGGAGAACAGTTGAGGGCGATGATGGTGGACA

Fln Alignment:

Contig5768___MAGVIAAGVANLN--VLGRETAEFTSFRPVFLRGNSQGLSSASSLCDYRILADSKRKKHGIFRKQNINRSTVVSPRAVSDTFSELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYASNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKINDEGR
B8LPY4_______________MAGVMATGAANLNMNILARETADFTSFRPVFLRGNSQGLSSASSLCDTRISADSKQKKPWISRKQNGNRSTVVSPRAVSDTFNELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYSSNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKIDNEGR

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
229		85		14	0.993533
386	25		75		0.996473
411	88	11			0.923564
412	88			11	0.923564
414	88			11	0.923564
415		11	88		0.923564
417			88	11	0.923564
419	11		88		0.923564
455		11	88		0.923564
456	88		11		0.923564
463	88		11		0.923564
464	11			88	0.923564
467		88		11	0.923564
470			11	88	0.923564
471		11		88	0.923564
472	88			11	0.923564
475	88	11			0.923564
477		11		88	0.923564
500	88			11	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain