SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5766

Length: 1089 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5766

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6700	41/42

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase (Fragment) n=1 Tax=Pinus pinaster RepID=Q9M4B4_PINPS	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	peroxidase	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	69%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	69%
Blast2go	Methane metabolism	00680	69%
Blast2go	Phenylpropanoid biosynthesis	00940	69%
Blast2go	Biosynthesis of phenylpropanoids	01061	69%
Blast2go	Metabolic pathways	01100	69%
Blast2go	Biosynthesis of secondary metabolites	01110	69%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	69%
Blast2go	cellular response to hypoxia	GO:0071456	Biological Process	69%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	69%
Blast2go	heme binding	GO:0020037	Molecular Function	69%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	69%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	69%
Blast2go	membrane	GO:0016020	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NST7

Fln msg: your sequence is shorter than subject: 305 - 329

Fln protein: VVTLAVTQFYNTKCPQAESIVRGVVTSFFNADKSIPS*PWLSLIHDCFVRGCDASVLIDPVGNMVPEKAAFPNLSLRGFNIIDAAKTAVETKCPGVVSCADIIALATRDGVALAGGPQYSLPTGRRDGTISSINDVNLPGPSSLVSDAAAAFSAKGLSISEMVTLLGAHTVGNSLCSFFSDRLYSFQGSGTADPSMDPTLVVKLKKVCPSPTSSSTQDPNVFLDQNTSFIFDNSYYKQLQLKRGILQIDQELASDKTTKNTVTSFATNGNVFSKSFVAAIIKMGNIQVLTGNNGQIRKNCRAVN*

Protein Length: 306

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTACAACACCAAGTGTCCGCAAGCAGAATCCATCGTGCGGGGAGTAGTCACAAGTTTCTTTAATGCAGACAAGTCTATTCCGTCGTGACCTTGGCTGTCACTCATTCATGACTGTTTCGTAAGGGGCTGCGACGCATCGGTTCTGATTGATCCTGTAGGCAATATGGTACCAGAGAAAGCGGCATTCCCAAATCTATCGCTGAGAGGATTTAATATAATCGATGCAGCAAAAACGGCTGTCGAAACAAAATGCCCGGGTGTTGTCTCTTGTGCTGATATAATTGCGCTTGCTACCAGAGACGGTGTTGCCCTGGCAGGAGGGCCACAATACAGTCTACCAACGGGAAGAAGAGATGGAACCATATCTTCAATAAACGATGTGAATTTACCCGGTCCTAGTTCACTCGTTTCTGATGCAGCTGCAGCATTCTCTGCCAAGGGTTTGAGCATCTCAGAAATGGTCACTCTACTAGGCGCTCATACCGTTGGGAACTCGCTCTGCAGTTTCTTTAGCGATCGACTCTACAGTTTCCAAGGAAGCGGGACTGCGGATCCTTCTATGGATCCAACCTTAGTGGTGAAGTTGAAGAAAGTCTGCCCATCTCCGACGTCGTCTTCAACACAGGACCCCAACGTGTTTCTGGACCAGAACACTTCGTTTATCTTCGACAACAGCTACTATAAACAACTGCAATTAAAGCGTGGAATTCTTCAAATTGATCAGGAACTCGCCTCTGACAAAACAACCAAAAACACTGTGACGAGCTTCGCCACCAATGGAAATGTGTTTAGTAAGAGCTTCGTCGCCGCCATCATAAAAATGGGAAACATCCAAGTATTAACTGGCAACAACGGACAAATTCGAAAGAATTGTAGAGCCGTGAATTGA___GCATCGTTTTCCTACTAAACGAGCACGAGAAAAGAAAATCAGGTCCCCAATATACATTGGAGACACGAATAAGGGATATCCCCCATTTAGTTTCATCTCACAATGCAAAATAACTGGAAACGCAGAATTGTAATGCCATGAACGCTTATTCTTACCGAATATTGCATAATTAC

Fln Alignment:

Contig5766___FYNTKCPQAESIVRGVVTSFFNADKSIPS*PWLSLIHDCFVRGCDASVLIDPVGNMVPEKAAFPNLSLRGFNIIDAAKTAVETKCPGVVSCADIIALATRDGVALAGGPQYSLPTGRRDGTISSIND-VNLPGPSSLVSDAAAAFSAKGLSISEMVTLLGAHTVGNSLCSFFSDRLYSFQGSGTADPSMDPTLVVKLKKVCPSPTSSSTQDPNVFLDQNTSFIFDNSYYKQLQLKRGILQIDQELASDKTTKNTVTSFATN-----GNVFSKSFVAAIIKMGNIQVLTGNNGQIRKNCRAVN
A9NST7_______________FYSASCPKAESIVRSTVQTYFNADHTIAAGLLRLSFHDCFVQGCDGSILITGPS---AERNSLTNLGLRGFEVIEDVKEQLESVCPVVVSCADILALAARDVVVLSNGPTWSVPTGRRDGLVSSSSDTANLPTPADSITVQKKKFADKGLTTEDLVTLVGAHTVGQSDCQIFRYRLYNFTATGNADPTITSSYLTQLQSLCPASGDGSKR---VALDKGSQMYFDVSFFKNVRDGNAVLESDQRLWGDESTKAVVQNYAGSVRGILGFRFDFDFTKAMIKMSNIGVKTGTDGEIRKVCSAFN

SNPs (tot: 116)

Position	A %	C %	G %	T %	Probability
145		25		75	0.996473
146			25	75	0.996473
154	75	25			0.996473
155			75	25	0.996473
156			75	25	0.996473
162		75		25	0.996473
163		25	75		0.996473
166			75	25	0.996473
273		16		66	0.988813
278	83			16	0.994512
279	66	16	16		0.988813
280	83	16			0.994512
281		83		16	0.994512
282	50			16	1.0
283	66		16		0.988813
284	66	16	16		0.988813
285	66	16		16	0.988813
289		83	16		0.994512
291		83		16	0.994512
292	16		83		0.994512
293			83	16	0.994512
294		16	83		0.994512
295	16			83	0.994512
296		16	83		0.994512
298		16		83	0.994512
299	16		83		0.994512
339			85	14	0.993533
340		14		85	0.993533
343			14	85	0.993533
344	14		85		0.993533
347		83		16	0.994512
352	83			16	0.994512
354		16	83		0.994512
355	85	14			0.993533
356		14	85		0.993533
358		14	71	14	0.984337
359		14	85		0.993533
360	14	71		14	0.984337
361		85	14		0.993533
364	85	14			0.993533
365	85			14	0.993533
367	85		14		0.993533
369	85			14	0.993533
395	88	11			0.923564
396	88		11		0.923564
397		88		11	0.923564
399	88		11		0.923564
402		11		88	0.923564
406		88	11		0.923564
407	88		11		0.923564
408	88	11			0.923564
411	88		11		0.923564
412	88			11	0.923564
416		11		88	0.923564
417			88	11	0.923564
418		11		88	0.923564
419	11		88		0.923564
436			88	11	0.923564
437		11		88	0.923564
438			11	88	0.923564
441		88	11		0.923564
443	11	88			0.923564
446			11	88	0.923564
447	11			88	0.923564
449	11			88	0.923564
472	12	87			0.992554
480		11		88	0.923564
484			88	11	0.923564
486	90		10		0.90298
490		90	10		0.90298
492		10	90		0.90298
493	90	10			0.90298
494	90			10	0.90298
495	90			10	0.90298
496			10	90	0.90298
556			88	11	0.923564
557	88			11	0.923564
559			11	88	0.923564
611	80	20			0.999996
614		20	80		0.999996
619	80	20			0.999996
620		20	80		0.999996
628	80	20			0.999996
629	80			20	0.999996
634	20		80		0.999996
636		77		22	0.999999
645	90	10			0.90298
661	90			10	0.90298
662			90	10	0.90298
664	90		10		0.90298
666		90		10	0.90298
668	10	90			0.90298
669	90	10			0.90298
670	90			10	0.90298
674	10		90		0.90298
675		16		83	0.999991
676			16	83	0.999991
679			16	83	0.999991
680			83	16	0.999991
685	83			16	0.999991
686			83	16	0.999991
687	83		16		0.999991
688	83		16		0.999991
690	83			16	0.999991
691		83	16		0.999991
693		16		83	0.999991
694	16	83			0.999991
695		16	83		0.999991
697		16		83	0.999991
698	16			83	0.999991
950		70	30		1.0
1015	80	20			0.995493
1017		20		80	0.995493
1028	75			25	0.996473
1029	75			25	0.996473
1030		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain