SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5704

Length: 1192 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5704

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9460	16/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	30S ribosomal protein S10, putative n=1 Tax=Ricinus communis RepID=B9S9Q5_RICCO	-	-	5.00264e-43	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	30s ribosomal protein s10	-	-	0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	90%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	90%
Blast2go	tRNA binding	GO:0000049	Molecular Function	90%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S10	IPR001848	-	-
Sma3	Ribosomal protein S10 subgroup	IPR005731	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNH5

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 170 - 195

Fln protein: HHLSLTFNIPNPHRRTHVVFTPSEGLRCNTGLRTTNVQQSFRKLQAEGRIRPVAVTATSSTAPPLTVPKQKIRIKLRSYWVPLIEEACKQILDAARSTNAKTMGPVPLPTKRRVYCVLKSPHVHKDAREHFQKKTHQRLIDVENPNAQTIDALMQLDIAAGVDVEVKLS*

Protein Length: 171

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGGGATTTATATGTTCTCCGACATAGCTTTTGGGCATCGGATAAGGGGGTGAATGGGTTTATATCTCGGAAAGAACGAGAGCATTCGCGCACAGAACGCCAAAGGCAAAAATTACAGAGCTAAGAAGCCATGACCAATGCCATGCCTTTGTGTCCACTCTCGCTGCTTCCCTCTTCCTTTTCTGCAACTAAATTTGGCACCATAA_-_ATGACATCATCTGTCACTCACCTTCAACATTCCCAATCCGCATCGAAGGACCCACGTTGTGTTCACGCCATCTGAAGGCCTCCGGTGCAATACTGGTCTTCGAACGACAAATGTTCAGCAAAGTTTCAGGAAATTACAGGCTGAAGGAAGGATTCGTCCTGTTGCTGTCACGGCCACTTCATCAACTGCTCCTCCTCTGACAGTGCCAAAGCAGAAGATTCGTATCAAACTGCGGTCCTATTGGGTTCCTCTAATAGAAGAGGCATGCAAGCAAATCTTGGATGCTGCGAGGTCTACTAATGCAAAGACAATGGGACCTGTGCCTCTACCAACCAAACGCCGGGTTTATTGTGTTCTAAAGTCTCCTCATGTGCACAAAGATGCACGTGAACATTTTCAAAAAAAGACCCACCAAAGGCTCATTGATGTGGAGAATCCAAATGCACAGACGATAGATGCACTGATGCAGCTTGATATCGCCGCTGGTGTTGATGTGGAGGTTAAACTCTCATAAGTACTTCTAGAGTTTGTAAATTTGCGGTGATTATCTTCATGTAACTTAAAATTTGTTTTCTGCATTTCATCTTTTGGCTGCTGCCTGTATCTGTTTTGCATTCTGCTATACATAATTGTTTATTGTATTGCTGGCAGATGGTATTTTTGGCATTTATTTTCCATTGTGTATATTTGGACAACATTATTTTTGGTCGTTAGTTTCTTCCTATTTGGAATGTTGGGATACGTAATTGTTTCTGCAATTTCTGTAAGATGGTCTTTTTTGGCATTTGTTTTTCATTATTATGTATATTAGGCCAACGTTATCTAGTAGATTTAACTTTATTGGGAGTGGTTGTATTACAGTAGCATCTTAATTAGTATCTAACTTGATGGCGCAATCACCACACTGTCTGTGATATTCCTCGATGCTTGCTAAGGTTTCTATCCCTATCACAAGAAGAA

Fln Alignment:

Contig5704___SLTFNIPNPHRRTHVVFTPSEGLRCNTGLRTTNVQQSFRKLQAEGRIRPVAVTATSSTAPPLTVPKQKIRIKLRSYWVPLIEEACKQILDAARSTNAKTMGPVPLPTKRRVYCVLKSPHVHKDAREHFQKKTHQRLIDVENPNAQTIDALMQLDIAAGVDVEVKLS
A9NNH5_______________SLAFNIPNPHRRTQVVFTPFEGLRCNTGLGTTNVQQSFEKLRAEGRIRPVTVTATSSTAPPLTVPKQKIRIKLRSYWVPLIEEACKQILDAARSTNAKTMGPVPLPTKRRVYCVLKSPHVHKDAREHFEKRTHQRLIDVENPNAQTIDALMQLDIAAGVDVEVKLS

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
234	57		42		1.0
237	57	42			1.0
238	57		42		1.0
243	57	42			1.0
245		57		42	1.0
246	57		42		1.0
247			42	57	1.0
258		85	14		0.993533
344	75			12	0.975346
346	87			12	0.992554
347	87		12		0.992554
349		12		87	0.992554
350		12	87		0.992554
354	87		12		0.992554
357	87			12	0.992554
358	87		12		0.992554
359	87			12	0.992554
360		12	87		0.992554
361	12			87	0.992554
362		12		87	0.992554
571		90	10		0.90298
572	90			10	0.90298
573	90		10		0.90298
576		10	90		0.90298
577		77		22	0.999999
578		88		11	0.923564
581		11	88		0.923564
584		11		88	0.923564
587	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain