SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5687

Length: 1006 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5687

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6766	21/23

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine synthase n=3 Tax=Oryza sativa RepID=Q5Z8Y9_ORYSJ	-	-	58%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	cysteine synthase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cysteine synthase.	EC:2.5.1.47	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	80%
Blast2go	Sulfur metabolism	00920	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	cysteine biosynthetic process from serine	GO:0006535	Biological Process	80%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	80%
Blast2go	cysteine synthase activity	GO:0004124	Molecular Function	80%
Blast2go	transferase activity	GO:0016740	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Glucoamylase	IPR000165	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cystathionine beta-synthase	IPR005857	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3		IPR012335	-	-
Sma3		IPR017909	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS10

Fln msg: Overlapping hits, possible frame ERROR between 259 and 249, your sequence is shorter than subject: 242 - 401

Fln protein: VVTLAVTQRGYKFIAVMPANYSLERRIITS*PWLSLYLTEPALGFTTILKKIEELRETIPNVHMLDQLSNPANPDAHFQGTGxxxxxEDTAGKLDIFVSGSGTGGTITGVGRYLKMKNPSIKVICVEALESPVLSSGQTGCHKIQGISPGFIPDNLDRSVIDEIITVSSEEAMLYARKIAREEGLLVGISSGAAFAAALKVGKRAENAGKLITTILPSAGERYLSTELFSSIREECSNMSF*

Protein Length: 243

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGAGGCTATAAATTTATTGCAGTGATGCCAGCTAATTATTCTTTGGAGCGCCGCATAATAACGTCGTGACCTTGGCTGTCACTCTACTTGACAGAACCTGCACTTGGTTTTACCACAATACTGAAAAAGATTGAAGAGTTAAGGGAAACCATTCCCAATGTGCATATGTTGGATCAACTTAGCAATCCTGCTAATCCTGATGCACACTTTCAAGGGACAGGTxxxxxxxxxxxxxxxGAAGATACAGCAGGCAAATTGGACATATTTGTTTCAGGTTCTGGAACAGGAGGAACTATAACAGGGGTTGGGCGATATCTGAAGATGAAAAACCCATCTATTAAAGTCATTTGCGTTGAAGCTTTAGAGAGCCCTGTACTTTCGAGTGGGCAGACAGGATGTCACAAGATACAAGGTATTTCACCTGGATTTATACCAGACAATCTGGACAGGTCTGTGATTGATGAGATTATTACAGTGTCATCAGAGGAGGCAATGCTTTATGCAAGAAAGATCGCTAGAGAGGAAGGGTTGCTTGTAGGCATATCATCAGGTGCAGCATTTGCAGCTGCTTTAAAAGTTGGAAAACGAGCAGAGAATGCCGGTAAGTTGATAACAACAATTCTTCCAAGTGCCGGAGAACGCTATTTGAGCACAGAGCTGTTTTCTTCCATTAGAGAAGAGTGTAGTAACATGAGCTTTTGAGAAAAGATTTTGGCATTCTGAAACAGTGGTGTTAACTACATTGTCAAATGAGATAGAGTAAAGATGGGCATAGCATAGCAGATACCTCTTTTGATCGACTAAACAAGACAAACGAACTTGTATGTGAGCATACATGCATGCATCTTGAGTGCGTGCATATAGAGTGGCACATCTGTTACCTTTTAGTCCGTTCTAACCTTAAAACATTGCAGATTATTACAGTTGAGTGTGTGTATAATATACAGTAGCATTCGCAGTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig5687___RGYKFIAVMPANYSLERRIITS*PWLSLYLTEPALGFTTILKKIEELRETIPNVHMLDQLSNPANPDAHFQGTGxxxxEDTAGKLDIFXXXXXXXXXXXXXXRYLKMKNPSIKVICVEALESPVLSSGQTGCHKIQGISPGFIPDNLDRSVIDEIITVSSEEAMLYARKIAREEGLLVGISSGAAFAAALKVGKRAENAGKLITTILPSAGERYLSTELFSSIREECSNM
A9NS10_______________KGYKLILTMPASMSLERRVLLRAFGAELVLTEAAKGMKGAVQKAEEILNKTPNAYMLQQFDNPANPKVHYETTGxxxxEDTEGKVDIFVAGIGTGGTVTGVGRYLKGKNPNIKIIGVEPTESNILSGGKPGPHKIQGIGAGFIPRNLDVDILDEVIQISSDEAVEMAKQLALQEGLMVGISSGAAAAAAIEVAKRSGNSGKLIAVVFPSFGERYLSTVLFQSIREECEKM

SNPs (tot: 71)

Position	A %	C %	G %	T %	Probability
87		66		33	0.997452
89	33			66	0.997452
90	33	66			0.997452
92	33			66	0.997452
94	66			33	0.997452
98			33	66	0.997452
99			33	66	0.997452
100			66	33	0.997452
103	33			66	0.997452
105	33			66	0.997452
106		66		33	0.997452
110		66		33	0.997452
113	33			66	0.997452
265	60			40	1.0
266	60	40			1.0
268	60			40	1.0
269			40	60	1.0
273		40	60		1.0
274		60		40	1.0
275	60			40	1.0
280	60			40	1.0
281	60		40		1.0
283		40		60	1.0
284	40		60		1.0
285		40	60		1.0
286	60			40	1.0
408	75	25			0.996473
411		25	75		0.996473
413			75	25	0.996473
414		75	25		0.996473
416		25	75		0.996473
417	75	25			0.996473
418		75		25	0.996473
419	75			25	0.996473
422	75	25			0.996473
456	83	16			0.994512
457			16	83	0.994512
458	83			16	0.994512
460		83	16		0.994512
461	83			16	0.994512
465	83	16			0.994512
466	83			16	0.994512
471		16	83		0.994512
474	83			16	0.994512
475		28	71		1.0
476	14		85		0.993533
484		14		85	0.993533
485		14		85	0.993533
486			85	14	0.993533
487	85			14	0.993533
488			14	85	0.993533
490	85	14			0.993533
491			85	14	0.993533
492	85		14		0.993533
494		14		85	0.993533
496		14		85	0.993533
498	85	14			0.993533
499	14	85			0.993533
512		12	87		0.992554
513			87	12	0.992554
514	87			12	0.992554
524		12		87	0.992554
525	12			87	0.992554
526	87	12			0.992554
528		12	87		0.992554
529	12	87			0.992554
544			87	12	0.992554
545	87			12	0.992554
546			87	12	0.992554
547	87	12			0.992554
549		12	87		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain