SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5649

Length: 723 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5649

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6108	21/28
SustainPine v2.0	sp_v2.0_unigene61956	3/28
SustainPine v2.0	sp_v2.0_unigene64109	3/28

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb\|AAD55467.1\|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb\|AEE36353.1\| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana]	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	pre-mrna-processing-splicing factor 8-like	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	96%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	96%
Blast2go	Metabolic pathways	01100		0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	96%
Blast2go	sucrose biosynthetic process	GO:0005986	Biological Process	96%
Blast2go	starch metabolic process	GO:0005982	Biological Process	96%
Blast2go	seed maturation	GO:0010431	Biological Process	96%
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	96%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	96%
Blast2go	cytosol	GO:0005829	Cellular Component	96%
Blast2go	spliceosomal complex	GO:0005681	Cellular Component	96%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	96%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	96%
Blast2go	chloroplast	GO:0009507	Cellular Component	96%
Blast2go	membrane	GO:0016020	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	FAS1 domain	IPR000782	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Pre-mRNA-processing-splicing factor 8	IPR012591	-	-
Sma3	PROCN	IPR012592	-	-
Sma3	PRO, C-terminal	IPR012984	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	EGF, extracellular	IPR013111	-	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
148	66	33			0.997452
150		66		33	0.997452
151	66	33			0.997452
152	66		33		0.997452
154		66	33		0.997452
155	33	66			0.997452
156	66	33			0.997452
158	66			33	0.997452
162		33		66	0.997452
164	66		33		0.997452
167		33		66	0.997452
168			66	33	0.997452
170	33	66			0.997452
194		25		75	0.996473
197			25	75	0.996473
199		75	25		0.996473
200	25			75	0.996473
202	75	25			0.996473
203			75	25	0.996473
206	75		25		0.996473
208		75		25	0.996473
211		25		75	0.996473
217		25	75		0.996473
218	25		75		0.996473
235		20	80		0.995493
236	80		20		0.995493
238	80	20			0.995493
239	80		20		0.995493
243	20			80	0.995493
250	80			20	0.995493
251	80		20		0.995493
253		20		80	0.995493
257	80			20	0.995493
259	16		16	66	0.988813
262	83		16		0.994512
266	16		83		0.994512
267		16		83	0.994512
268		16	83		0.994512
272	83		16		0.994512
275	83			16	0.994512
276			16	83	0.994512
277	83			16	0.994512
280		16	83		0.994512
314		50	50		1.0
327		50		50	1.0
329	63		36		1.0
334			68	5	1.0
335	73			26	1.0
336		31	63		1.0
337	26	5	63		1.0
615		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain