SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5595

Length: 820 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5595

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13165	25/25

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00400, WD40, WD domain, G-beta repeat	-	-	3.0e-07	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	transcriptional corepressor leunig	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	78%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	78%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	78%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
140	66	33			0.997452
143		33	66		0.997452
144			33	66	0.997452
146	66		33		0.997452
148		33		66	0.997452
150	66			33	0.997452
151			66	33	0.997452
152	33		66		0.997452
157			33	66	0.997452
164	66			33	0.997452
165		33	66		0.997452
198		25		75	0.996473
199			25	75	0.996473
200		75		25	0.996473
201	75		25		0.996473
203	75	25			0.996473
205	75			25	0.996473
206			75	25	0.996473
213			75	25	0.996473
214		25		75	0.996473
216		25	75		0.996473
217	75			25	0.996473
219			20	80	0.995493
222			20	80	0.995493
227		20	80		0.995493
237		20	80		0.995493
238	80			20	0.995493
239	80	20			0.995493
294	62	37			1.0
296	12		50	37	1.0
298	62		37		1.0
303	62	37			1.0
304	62			37	1.0
305	62			37	1.0
307		62	37		1.0
357	87		12		0.992554
359		12	87		0.992554
360		12		87	0.992554
361			87	12	0.992554
362	87			12	0.992554
365	87	12			0.992554
369	14			85	0.993533
370		14	85		0.993533
372		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain