SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5424

Length: 2261 nt

UniGene Fasta

>uagpf_v2_unigene5424
CGTCGTGACCTTGGCTGTCACTCATGGACATCGTTGAAACCCTGGTATTGTTCGGCCCCCATGGTAGTTCCTCGAGCTTGAGAGAGAAGGCACGACCCATTTCGTTTTTCAACAGTGACAGGCAACCCATTAGCTCAGTTTCATCTATTCATGGCGTACGAAAGCTATGGGCGCGATTATGAGGAGACTTACGACGACGGCGTGGAACAGCAGGAATCCACCTACGATCCTCTATTCGTTCCAGACGCTGTGAGGACCTTCGTGGTATTTCTCTACAGACATATCAGAGAAAAAAAATGTCTACGAAATCCACCAGATGTACGAGGGCAGCTTCCAGAAGCTGAGCGAACGAATGTTCAAGGAATCTCCATGGCCCTCGGTGGAGGCCATTGCTCCATTCGTCGACAACGATCATGTATTCTGTTTGCTTTACAGAGAAATGTGGTTCCGCCATCTTTATGCGAGGCTGTCCCCAAATCTAAAGCAGCGGGTCGAATCCTGGGACAATTATTGTAGTCTGTTTCAGGTCATTGTTCACGGCGTGGTTAACATGCAGTTACCGAATCAATGGCTCTGGGATATGATCGATGAGTTTATTTATCAGTTCCAGTCGTTTTGTCAGTATCGTGCTAAGCTCAGGAACAAGACTGATCAAGAACTAGCTTTTCTGCGGGAATGTGATGAGGTGTGGAATGTCTATGGTGTGCTGAACTATTTACAGGCTCTTGTTGAGAAGTCTGTGATCATCCAGATCCTAGAGGAAGAGAAAGAAGGTAATTTAACATTTACTGCAACTGATGGATATGACTACAATGGAGGAAGCAATGTTCTGAAGGTTCTGGGGTACTTTAGTATTATTGGTCTACTTCGTGTACATTGCCTTCTTGGAGATTATTACAGTGGACTCAAGTGCTTGGCACCTATAGATGTTAACCAGACAGGTGTCTACAATTCAGTGATTGGAAGCCATATCACAACTATTTATTATTATGGATTCGCCAACCTTATGTTGAGAAGGTATGTTGAGGCAATACGGGCCTTCAATCAAGTTCTGTTGTATATAATAAAGACCAAACAATTCCATCAAAAGTCTCCACAGTTTGACCAAATTCTGAAGAAAAATGAACAGATGTATGCTCTATTGGCTATATGCCTCTCTATCTGTCCACAAATGAAGCTTGTTGAGGAAAATGTGAACAATCAGCTGAAAGAGAAGTATGGAGAGAAGATGGCAAGAATGCAGAGAAGTGATGAGGCTGTGTATGACGAACTTTTTCGTGTGCCTGTCGTCACTTTATTACTCCTTCAGTACCAAACTATGATGAAGCTCTTGTAAATTATAACCAGGATGCATATAGGCTTCAGTTGAAGCTGTTCTTATCAGAAGTAAGACAGCAACAGCTTTTGTCAGGTCTACGGAGCTTCTTGAAGTTGTATACATCCATCTCAATGGAAAAGCTCGCGAATTTTATGGATGTTGATGAGTCTACCTTAAGGACAACTCTTATGACATACAAGCATAAGACTCATGCAATTGATCATGATGGAAGAATTATATCAAATGCAGATGTTGACTTTTATATTGATGAGGATATTGTTCATATTGTTGAATCAAAGTCTTCAAAGCTATACGCTGATAACTTTATGCGTCACATTATCAAGTGTGAAGAGATTATTAGTGATTTGGACAGAGTTAAGCTTGAATAAGATGGTTGCTGTTTTTGCATTATGGAAATGCCAGCTGTAATGAGGTCAAACATCCAAATTTTGTAATTAGAGAAGAGCAGTCATGGATTTTGGGAAGTGTTTGTGCATTGTTTCAGGATATCCAAAGCTATGAGCTTATTCAAGGGACACATCTGCATTCATTTTTTCCTATTGAGCATGTTATGCAGAATTCCAACCTTTTATTTTAATTAATTTCATTAAAGATGTCAAATTGGTTTAGCCTGGTGGTTCTACAGGAAATGTTAACCGGTTCTCTGTTGAGATCCCTTTTTTTCAAACTACGAAATTTCTAGCACATCCAAGAGATCAATTGGGAAATGATTTGTTGAATCTGAGCATGTTTGCAAAATTGCAAAACTTTGTTTTGTACCAATTCATCTCTTCAAGTGTCAAATTGATTTGATATGATGGTTGTACCATAAGTTGAAATAGATCTTTACTCGTGGAACAAATCTCAGCAATGTTTTAGGGTGATCCGCAGGACCCTGATTTCTCCTATTTATTGGATGAATCAAATAGGATTTACTCTCTAG

Ace file of the UniGene uagpf_v2_unigene5424

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6536	102/110
SustainPine v2.0	sp_v2.0_unigene79653	2/110

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] ref\|NP_680223.1\| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gb\|AED93480.1\| RNA polymerase I-associated factor PAF67 [Arabidopsis thaliana] gb\|AED93481.1\| RNA polymerase I	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	eukaryotic translation initiation factor 3 subunit l-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	87%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	Translation initiation factor 3 complex, subunit L	IPR019382	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADC8

Fln msg: Overlapping hits, possible frame ERROR between 1276 and 1273, your sequence is longer than subject: 464 - 233

Fln protein: MYEGSFQKLSERMFKESPWPSVEAIAPFVDNDHVFCLLYREMWFRHLYARLSPNLKQRVESWDNYCSLFQVIVHGVVNMQLPNQWLWDMIDEFIYQFQSFCQYRAKLRNKTDQELAFLRECDEVWNVYGVLNYLQALVEKSVIIQILEEEKEGNLTFTATDGYDYNGGSNVLKVLGYFSIIGLLRVHCLLGDYYSGLKCLAPIDVNQTGVYNSVIGSHITTIYYYGFANLMLRRYVEAIRAFNQVLLYIIKTKQFHQKSPQFDQILKKNEQMYALLAICLSICPQMKLVEENVNNQLKEKYGEKMARMQRSDEAVYDExxxCACRHFITPSVPNYDEALVNYNQDAYRLQLKLFLSEVRQQQLLSGLRSFLKLYTSISMEKLANFMDVDESTLRTTLMTYKHKTHAIDHDGRIISNADVDFYIDEDIVHIVESKSSKLYADNFMRHIIKCEEIISDLDRVKLE*

Protein Length: 465

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGACATCGTTGAAACCCTGGTATTGTTCGGCCCCCATGGTAGTTCCTCGAGCTTGAGAGAGAAGGCACGACCCATTTCGTTTTTCAACAGTGACAGGCAACCCATTAGCTCAGTTTCATCTATTCATGGCGTACGAAAGCTATGGGCGCGATTATGAGGAGACTTACGACGACGGCGTGGAACAGCAGGAATCCACCTACGATCCTCTATTCGTTCCAGACGCTGTGAGGACCTTCGTGGTATTTCTCTACAGACATATCAGAGAAAAAAAATGTCTACGAAATCCACCAG_-_ATGTACGAGGGCAGCTTCCAGAAGCTGAGCGAACGAATGTTCAAGGAATCTCCATGGCCCTCGGTGGAGGCCATTGCTCCATTCGTCGACAACGATCATGTATTCTGTTTGCTTTACAGAGAAATGTGGTTCCGCCATCTTTATGCGAGGCTGTCCCCAAATCTAAAGCAGCGGGTCGAATCCTGGGACAATTATTGTAGTCTGTTTCAGGTCATTGTTCACGGCGTGGTTAACATGCAGTTACCGAATCAATGGCTCTGGGATATGATCGATGAGTTTATTTATCAGTTCCAGTCGTTTTGTCAGTATCGTGCTAAGCTCAGGAACAAGACTGATCAAGAACTAGCTTTTCTGCGGGAATGTGATGAGGTGTGGAATGTCTATGGTGTGCTGAACTATTTACAGGCTCTTGTTGAGAAGTCTGTGATCATCCAGATCCTAGAGGAAGAGAAAGAAGGTAATTTAACATTTACTGCAACTGATGGATATGACTACAATGGAGGAAGCAATGTTCTGAAGGTTCTGGGGTACTTTAGTATTATTGGTCTACTTCGTGTACATTGCCTTCTTGGAGATTATTACAGTGGACTCAAGTGCTTGGCACCTATAGATGTTAACCAGACAGGTGTCTACAATTCAGTGATTGGAAGCCATATCACAACTATTTATTATTATGGATTCGCCAACCTTATGTTGAGAAGGTATGTTGAGGCAATACGGGCCTTCAATCAAGTTCTGTTGTATATAATAAAGACCAAACAATTCCATCAAAAGTCTCCACAGTTTGACCAAATTCTGAAGAAAAATGAACAGATGTATGCTCTATTGGCTATATGCCTCTCTATCTGTCCACAAATGAAGCTTGTTGAGGAAAATGTGAACAATCAGCTGAAAGAGAAGTATGGAGAGAAGATGGCAAGAATGCAGAGAAGTGATGAGGCTGTGTATGACGAAxxxxxxxxxTGTGCCTGTCGTCACTTTATTACTCCTTCAGTACCAAACTATGATGAAGCTCTTGTAAATTATAACCAGGATGCATATAGGCTTCAGTTGAAGCTGTTCTTATCAGAAGTAAGACAGCAACAGCTTTTGTCAGGTCTACGGAGCTTCTTGAAGTTGTATACATCCATCTCAATGGAAAAGCTCGCGAATTTTATGGATGTTGATGAGTCTACCTTAAGGACAACTCTTATGACATACAAGCATAAGACTCATGCAATTGATCATGATGGAAGAATTATATCAAATGCAGATGTTGACTTTTATATTGATGAGGATATTGTTCATATTGTTGAATCAAAGTCTTCAAAGCTATACGCTGATAACTTTATGCGTCACATTATCAAGTGTGAAGAGATTATTAGTGATTTGGACAGAGTTAAGCTTGAATAA___GATGGTTGCTGTTTTTGCATTATGGAAATGCCAGCTGTAATGAGGTCAAACATCCAAATTTTGTAATTAGAGAAGAGCAGTCATGGATTTTGGGAAGTGTTTGTGCATTGTTTCAGGATATCCAAAGCTATGAGCTTATTCAAGGGACACATCTGCATTCATTTTTTCCTATTGAGCATGTTATGCAGAATTCCAACCTTTTATTTTAATTAATTTCATTAAAGATGTCAAATTGGTTTAGCCTGGTGGTTCTACAGGAAATGTTAACCGGTTCTCTGTTGAGATCCCTTTTTTTCAAACTACGAAATTTCTAGCACATCCAAGAGATCAATTGGGAAATGATTTGTTGAATCTGAGCATGTTTGCAAAATTGCAAAACTTTGTTTTGTACCAATTCATCTCTTCAAGTGTCAAATTGATTTGATATGATGGTTGTACCATAAGTTGAAATAGATCTTTACTCGTGGAACAAATCTCAGCAATGTTTTAGGGTGATCCGCAGGACCCTGATTTCTCCTATTTATTGGATGAATCAAATAGGATTTACTCTCTAG

Fln Alignment:

Contig5424___MLRRYVEAIRAFNQVLLYIIKTKQFHQKSPQFDQILKKNEQMYALLAICLSICPQMKLVEENVNNQLKEKYGEKMARMQRSDEAVYDELxSCACRHFITPSVPNYDEALVNYNQDAYRLQLKLFLSEVRQQQLLSGLRSFLKLYTSISMEKLANFMDVDESTLRTTLMTYKHKTHAIDHDGRIISNADVDFYIDEDIVHIVESKSSKLYADNFMRHIIKCEEIISDLDRVKLE
D5ADC8_______________MLRRYVEAIRAFNQVLLYIVKTKQFHQKSPQFDQILKKNEQMYALLAVCLSICPQMKLVEENVNNQLKEKYGEKMARMQRSDEAVYDELxSYACPKFITPSVPNYDEPLVNYNQDAYRLQLKLFLSEVRQQQLLSGLRSFLKLYTSISMEKLANFMDIDESTLRTTLMTYKHKTHAIDHDGRIISNADVDFYIEEDIVHIIESKSAKLYADNFMRHIIKCEEIISDLDRVKLE

SNPs (tot: 107)

Position	A %	C %	G %	T %	Probability
25	66		33		0.997452
27	33		33	33	0.997753
29	33	33	33		0.997753
31	66	33			0.997452
33	66			33	0.997452
35		66	33		0.997452
37		33		66	0.997452
42	66			33	0.997452
44	33	66			0.997452
48		33	66		0.997452
49	33			66	0.997452
412	90		10		0.90298
441	88			11	0.923564
458	80		20		0.999996
461			20	80	0.999996
463			20	80	0.999996
466		22	77		0.999999
468			77	22	0.999999
469	77			22	0.999999
486	90		10		0.90298
588		15	84		0.999986
589	84		15		0.999986
591		84		15	0.999986
597		15	84		0.999986
600			15	84	0.999986
601	84	15			0.999986
604		15		84	0.999986
605	86	13			0.999973
606		13	13		0.999956
612	13			86	0.999973
615	86			13	0.999973
617			13	86	0.999973
619			86	13	0.999973
620			13	86	0.999973
622		13		86	0.999973
623	13			86	0.999973
624		13	86		0.999973
761		84	15		0.999986
763	84	15			0.999986
765	84			15	0.999986
767	15		84		0.999986
768	84	15			0.999986
769	84	15			0.999986
770			84	15	0.999986
771	84			15	0.999986
773	84		15		0.999986
774	84	15			0.999986
775	84			15	0.999986
777	84	15			0.999986
779		15	84		0.999986
780			84	15	0.999986
781		15		84	0.999986
976		10		90	0.90298
977	90		10		0.90298
980	90		10		0.90298
981		90		10	0.90298
982	90		10		0.90298
986	90	10			0.90298
989			11	88	0.923564
990	88		11		0.923564
991		11		88	0.923564
993	88		11		0.923564
995		11		88	0.923564
998	11		88		0.923564
1027		11		88	0.923564
1030		11		88	0.923564
1032	88			11	0.923564
1034	11		88		0.923564
1036	77	11			0.968132
1037	88			11	0.923564
1038		10		90	0.90298
1042			90	10	0.90298
1047		90		10	0.90298
1059		11		88	0.923564
1062	11			88	0.923564
1278	83			16	0.994512
1546	85	5		10	0.999793
1547	85	15			1.0
1548			10	90	0.999898
1552		15		85	1.0
1554	85		5	10	0.999793
1557	90	10			0.999898
1560	5		84	10	0.999846
1561	88	11			0.999937
1564	88	11			0.999952
1565	88			11	0.999952
1566		11		88	0.999952
1567	11			88	0.999952
1591			9	90	0.999842
1593	90	9			0.999842
1595	86	9	4		0.999642
1599	90	9			0.999842
1600		8		91	0.999766
1601		4	87	8	0.999414
1602	83	4	4	8	0.998844
1603		8	87		0.999414
1605	87	8		4	0.999414
1606		8		91	0.999766
1618		8		92	0.999718
1638	92	7			0.999602
1646	3		90	6	0.997073
1652	90	6	3		0.997952
1820		5		94	0.9982
2052	20			80	0.995493
2056			80	20	0.995493
2060			20	80	0.995493
2062	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain