SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5423

Length: 1035 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5423

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1105	13/26
SustainPine v2.0	sp_v2.0_unigene13108	9/26

Source	Descriptions	Term	Type	Identity
AutoFact	putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	rna-binding protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	0.0	70%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Splicing factor PWI	IPR002483	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
70			50	50	1.0
79	50			25	0.995533
80	50	25		25	0.995533
81	25	75			0.996473
350	85	14			0.993533
352	85			14	0.993533
354		85	14		0.993533
360		14	85		0.993533
361	85			14	0.993533
363			14	85	0.993533
364			14	85	0.993533
366	85			14	0.993533
369		16		83	0.994512
371		20	80		0.995493
374	20			80	0.995493
498		16		66	0.988813
500	83	16			0.994512
501	83		16		0.994512
503	16			83	0.994512
504	16	83			0.994512
508	83			16	0.994512
509		14	14	71	0.984337
511	71	14		14	0.984337
512		14		85	0.993533
513			28	71	1.0
515		14	85		0.993533
516	28		71		1.0
519	14		71	14	0.984337
521			14	85	0.993533
522	85		14		0.993533
523	85	14			0.993533
525		85	14		0.993533
527		14		85	0.993533
530	85	14			0.993533
531			85	14	0.993533
550		14		85	0.993533
552		85		14	0.993533
553		14		85	0.993533
556		85	14		0.993533
558	85	14			0.993533
559		14		85	0.993533
561		85		14	0.993533
562		85	14		0.993533
563	85		14		0.993533
565	85			14	0.993533
570	14	85			0.993533
573		14		85	0.993533
574	14		85		0.993533
606		42		57	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain