SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5398

Length: 845 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene5398 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene63	3/13
SustainPine v2.0	sp_v2.0_unigene26508	1/13
SustainPine v2.0	sp_v2.0_unigene31576	8/13

Source	Descriptions	Term	Type	Identity
AutoFact	Subtilisin-like protein n=1 Tax=Picea abies RepID=Q40764_PICAB	-	-	75%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	78%
Blast2go	subtilisin-like protease-like	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: Overlapping hits, possible frame ERROR between 522 and 510, and possible frame ERROR between 572 and 581, Distance to subject end: 169 aas, your sequence is shorter than subject: 282 - 779

Fln protein: RRDLGCHSWIFTVGAASIDREFLSNVVLGNGKIIQGKGITFSNLSQSAVHPLVYAGSIPDNSSYPAAARNCLLESLDASKAKGKVILCIANATATSKGIMKYTVQDAGGIGMIFVDDLQIFEAYDSGTFAATTVSTSSATEIFSYINSTRNPVATITPTEVVTNYKPAPxxxxxxSRGPGGLTQNILKPDxxxxGCHSIAAWDPPNTFIETDPSDTVLSGTVSTAFNMMSGTSVAVPHVSGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGELLTNESDI

Protein Length: 283

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGATTTTTACGGTTGGAGCGGCCTCAATCGACCGGGAATTCCTCTCCAACGTTGTGTTAGGCAACGGTAAGATTATTCAGGGTAAGGGCATCACCTTTTCGAATCTCAGCCAATCGGCCGTGCACCCGCTTGTGTACGCAGGAAGCATTCCTGACAACTCCAGTTACCCAGCAGCTGCAAGAAATTGTCTTCTAGAATCCTTAGACGCAAGCAAAGCGAAAGGAAAGGTTATACTCTGTATTGCAAATGCCACAGCTACATCGAAGGGAATTATGAAATACACAGTCCAGGACGCTGGAGGCATAGGCATGATTTTTGTGGACGATTTACAGATATTTGAAGCATATGACTCCGGCACCTTTGCAGCGACTACAGTAAGTACATCGTCTGCAACAGAGATCTTTTCTTACATAAACTCAACCAGAAATCCTGTTGCAACAATTACTCCAACAGAGGTTGTCACAAATTACAAGCCCGCTCCTxxxxxxxxxxxxxxxxxxTCAAGAGGACCTGGAGGGCTGACCCAGAACATTCTCAAGCCAGACGxxxxxxxxxTTGGCTGTCACTCAATTGCTGCATGGGATCCTCCCAATACGTTTATAGAAACAGATCCTTCAGACACAGTTCTTTCAGGGACGGTTTCTACCGCATTTAACATGATGTCTGGAACATCCGTAGCAGTTCCTCATGTTAGCGGAGCTGCTGCATTTGTAAAATCTATCAATCCTACTTGGAGCTCCTCTGCTATCAGATCAGCCCTGATGACAACAGCTATTGTAAGGAACAATATGGGAGAATTATTAACTAATGAATCAGATATCG

Fln Alignment:

Contig5398___WIFTVGAASIDREFLSNVVLGNGKIIQGKGITFSNLSQSAVHPLVYAGSIPDNSSYPAAARNCLLESLDASKAKGKVILCIANATATSKGIMKYTVQDAGGIGMIFVDDLQIFEAYDSGXXXXXXXXXXXXTEIFSYINSTRNPVATITPTEVVTNYKPAPLxxxxSSRGPGGLTQNILKPDVxxxGCHSIAAWDPPNTFIETDPSDTVLSGTVSTAFNMMSGTSVAVPHVSGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGELLTNESDI
Q40764_______________WIFTVGATSIDREFLSNVVLGNGKIIKGKGITMSNLSHSAVHPLVYAGSIPDKSSYPVAASNCLLDSLDASKAKGNVVVCIANDTAASRYIMKLAVQDAGGIGMVVVEDIQIFEAFDYGTFPATAVSKTSATEIFSYIKSNRNPVATITLTEVVTNYIPAPVxxxxSSRGPGGLTQNILKPDIxxxGVNIIAAWNPPNQSDE----DTVVSEMTPSTFNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGKLLTNESDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain