SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5331

Length: 1248 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5331

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11261	132/133

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	uncharacterized protein	-	-	52%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTS7

Fln msg:

Fln protein: MELGSKVIVFCKERHGAGLRLAHALRQSPSSSWKRTELPLELPLDSYGLVDVAASGQIVNFVDSEGSPQVSLILLQNYKAPTSACVAYEVLKFINSKASAQSSFTVIFPSFTVIPKSLQNLRCLQLEDMEQSLYAAEINEGSDFSKAVTRGLKRLPPTTHISDDLVASFLHFVHVLKVSAVLLVAPTTPNSRLDSKGTRMQQVEDSQMLCKLGDLLASHMELIFSKELLDNQNTPIEIEKNVEDDWRRLYG*

Protein Length: 253

Fln nts: ACTGTCGTCGTGACCTTGGCTGTCACCTCAACGCCTTCATTAAAGTTCATTCTCTGCTTCTTCACATCAGGATTTATATGTGTTTTCTCTCAGAGAGATCCAGAATTTTCAA_-_ATGGAATTAGGAAGCAAGGTGATTGTATTCTGCAAAGAGAGGCACGGTGCAGGCTTAAGGCTTGCACATGCCCTTCGCCAGAGCCCTTCTTCATCATGGAAAAGAACAGAACTACCTCTCGAGCTGCCACTGGACAGCTATGGACTGGTAGATGTTGCTGCATCTGGTCAAATTGTAAACTTTGTGGATTCAGAAGGCTCCCCGCAGGTGTCCTTGATACTCCTTCAAAACTACAAAGCTCCTACTAGTGCTTGCGTAGCCTACGAAGTTCTGAAGTTCATCAATTCAAAAGCTTCCGCGCAATCGTCTTTCACAGTCATATTTCCTTCTTTTACAGTAATTCCAAAATCCTTGCAAAATCTAAGATGTCTACAGCTTGAAGACATGGAGCAGTCTCTATATGCAGCTGAAATCAATGAAGGGTCTGATTTTTCAAAGGCTGTCACAAGGGGTCTTAAAAGGCTGCCACCAACGACACACATATCTGATGATCTCGTGGCTTCCTTTCTGCATTTTGTTCACGTTTTGAAGGTGTCTGCAGTGCTGCTGGTAGCTCCAACTACCCCAAACAGCCGTTTAGACAGCAAAGGAACCAGAATGCAACAAGTGGAAGACTCGCAGATGCTTTGCAAGCTTGGCGATCTTTTGGCAAGTCACATGGAACTTATATTCTCAAAAGAGTTACTGGACAATCAAAATACTCCCATTGAGATTGAGAAAAATGTAGAAGATGACTGGCGTAGATTGTATGGATGA___CACTTTATCTTCATTCCTGTTAAGAATTTTGTTTTGTATAATGTAACCTTTAAAAGTTTAGACTGAAAATGCTTAAATTGATGTTATGTTTTATCAAACATTACAAAAATTCAAATTCTTGATCTGGAACAAAACATGCAATATCTTGCTGGAAATTATGTTTCAGTGAATAGGAAAGCTGTTTGTTGTACGGTAACATACAGATCATGTTCTATTGCTGAAAAGTATAGAATTTGGAAACGGGCCACAAATCAAGTGTGATTTGATTGATAGTGGCTTCAATCTGTGATAAATATCCGATATTTTCCCATTGTTAGCACTCACTACTACACTACGCTGATAGTGTTTTAACAATGCAGCTGAAAGGTTGATTTGGTTAG

Fln Alignment:

Contig5331___MELGSKVIVFCKERHGAGLRLAHALRQSPSSSWKRTELPLELPLDSYGLVDVAASGQIVNFVDSEGSPQVSLILLQNYKAPTSACVAYEVLKFINSKASAQS-SFTVIFPSFTVIPKSLQNLRCLQLEDMEQSLYAAEINEGSDFSKAVTRGLKRLPPTTHISDDLVASFLHFVHVLKVSAVLLVAPTTPNSRLDSKGTRMQQVEDSQMLCKLGDLLASHMELIFSKELLDNQNTPIEIEKNVEDDWRRLYG
A9NTS7_______________MELGSKVIVSCKDRHGAGLRLAHALRQSPSTSWKRTELPLDLPLDSYGLVDVALSGQIVNFVDSEGSPQVSLILLQNYKAPTSACVAYEVLKFIKTKASTQSLSFTVIFPSFTVIPKSLQNLRCLQLEDMEQSLYAAEINEGSDFSKAITRGLKRLPPTTHISDDLLASFLHFVHVLKVPAVLLLAPITQNSRLDSKGTKMQQVEDSQMLCKLGDLLASHMELIFSKELLENQNTPIEIEKNVEDDWRRLYG

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
38			28	71	1.0
40		85	14		0.993533
41	57	14	28		1.0
43			42	57	1.0
44	85			14	0.993533
45	57	42			1.0
46	75	25			1.0
47		12	62	25	1.0
50		12	25	62	1.0
51	12	87			0.992554
52	75			25	1.0
53			25	75	1.0
56	25			75	1.0
59		25	75		1.0
60	25	75			1.0
252		14	85		0.993533
437		33		66	0.997452
438			33	66	0.997452
441		66	33		0.997452
444	33			66	0.997452
446		33		66	0.997452
449			33	66	0.997452
450	66		33		0.997452
452	66			33	0.997452
455	66	33			0.997452
456	80	20			0.995493
457		20	20	60	0.99255
460	20	60	20		0.99255
461	80			20	0.995493
462	80		20		0.995493
473	80			20	0.995493
474	80		20		0.995493
475	80			20	0.995493
476	80	20			0.995493
477	20			80	0.995493
528			80	20	0.995493
529	80	20			0.995493
530	80		20		0.995493
531	80	20			0.995493
582		59		41	1.0
691			97	2	0.999714
693	2	97			0.999714
1124		66		33	0.997452
1125	66			33	0.997452
1127	66		33		0.997452
1128	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain