SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5297

Length: 785 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5297

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14119	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	AMP deaminase [Arabidopsis thaliana] ref\|NP_850294.1\| AMP deaminase [Arabidopsis thaliana] sp\|O80452.2\|AMPD_ARATH RecName: Full=AMP deaminase; Short=AtAMPD; AltName: Full=Protein EMBRYONIC FACTOR 1 gb\|AAL07150.1\| putative AMP deaminase [Arabidopsis thalia	-	-	77%
FL-Next	sp=AMP deaminase; Arabidopsis thaliana (Mouse-ear cress).	-	-	81%
Blast2go	amp deaminase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	AMP deaminase.	EC:3.5.4.6	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	82%
Blast2go	Biosynthesis of plant hormones	01070	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	82%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	AMP deaminase activity	GO:0003876	Molecular Function	82%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%
Blast2go	microsome	GO:0005792	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	AMP deaminase	IPR006329	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
174			80	20	0.995493
175	60	40			1.0
176	60		20	20	0.99255
177			20	80	0.995493
178	80			20	0.995493
180	80	20			0.995493
181		20	60	20	0.99255
184		40		60	1.0
185	20			80	0.995493
187		80		20	0.995493
188		20		80	0.995493
189	20		80		0.995493
250	62	12		25	1.0
253		25		75	1.0
254		87		12	0.992554
255			25	12	1.0
257		12	87		0.992554
258	25		12		1.0
259		37	62		1.0
260		12		87	0.992554
261	12		12	75	0.975346
263		87	12		0.992554
264	12		12	75	0.975346
268	87		12		0.992554
270		12	87		0.992554
271	12	87			0.992554
272		12	87		0.992554
274		12	87		0.992554
275	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain