SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5278

Length: 706 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5278

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6674	14/17
SustainPine v2.0	sp_v2.0_unigene64507	3/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb\|CAA66480.1\| transcription factor [Vicia faba var. minor]	-	-	3.0e-30	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	fact complex subunit ssrp1	-	-	1.27339e-34	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	1.27339e-34	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.27339e-34	81%
Blast2go	DNA repair	GO:0006281	Biological Process	1.27339e-34	81%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.27339e-34	81%
Blast2go	DNA replication	GO:0006260	Biological Process	1.27339e-34	81%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	1.27339e-34	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	1.27339e-34	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.27339e-34	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	1.27339e-34	81%
Blast2go	nuclear euchromatin	GO:0005719	Cellular Component	1.27339e-34	81%
Blast2go	FACT complex	GO:0035101	Cellular Component	1.27339e-34	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR000910	-	-
Sma3	Structure-specific recognition protein	IPR000969	-	-
Sma3	Domain of unknown function DUF1747	IPR013719	-	-

Full-Lengther Next Prediction

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
46	33		66		0.997452
47	33			66	0.997452
48	33	66			0.997452
50	33			66	0.997452
51	33		66		0.997452
56	33			66	0.997452
59	33		66		0.997452
64		66	33		0.997452
66		66		33	0.997452
68		66		33	0.997452
83	75	25			0.996473
86		25		75	0.996473
88	75			25	0.996473
89	75		25		0.996473
91		25	75		0.996473
92	75	25			0.996473
93			75	25	0.996473
94	75			25	0.996473
96	80	20			0.995493
97	60	20	20		0.99255
99		80	20		0.995493
102		20	80		0.995493
104	80	20			0.995493
105	60	40			1.0
106	60			40	1.0
107	60	20		20	0.99255
108	80		20		0.995493
111	80			20	0.995493
114		20	80		0.995493
119	20	80			0.995493
165	16		83		0.994512
166	50	16			1.0
167	83	16			0.994512
168	83			16	0.994512
169	83			16	0.994512
170	83		16		0.994512
171	83		16		0.994512
172	83	16			0.994512
176		83	16		0.999991
178		16	83		0.999991
181			83	16	0.999991
182	83		16		0.999991
184		16	83		0.999991
185	83			16	0.999991
187	83	16			0.999991
332	80		13	6	0.999961
334	6	13	80		0.999961
338	86		13		0.999973
339	13		86		0.999973
342			86	13	0.999973
346	86		13		0.999973
347	86	13			0.999973
348	86			13	0.999973
501		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain