SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5250

Length: 1005 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5250

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23339	4/21
SustainPine v2.0	sp_v2.0_unigene27103	5/21
SustainPine v2.0	sp_v2.0_unigene31873	1/21
SustainPine v2.0	sp_v2.0_unigene60966	4/21
SustainPine v2.0	sp_v2.0_unigene61788	1/21
SustainPine v2.0	sp_v2.0_unigene78525	2/21
SustainPine v2.0	sp_v2.0_unigene81700	1/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-binding protein n=1 Tax=Lotus japonicus RepID=Q9SCA1_LOTJA	-	-	6.0e-39	54%
FL-Next	sp=Calmodulin-like protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Blast2go	calcium-binding protein	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
90	66	33			0.997452
91	66		33		0.997452
94	66		33		0.997452
97	33		66		0.997452
99	33	33	33		0.997753
100		66		33	0.997452
107		66	33		0.997452
109		33	66		0.997452
112	66	33			0.997452
113			66	33	0.997452
209			66	33	0.997452
214	33		66		0.997452
221			66	33	0.997452
265		25		75	0.996473
266			25	75	0.996473
273	25		75		0.996473
274	75	25			0.996473
275		25		75	0.996473
276	75			25	0.996473
278		50	25	25	0.995533
281	25		50	25	0.995533
283	75			25	0.996473
284		25	75		0.996473
286		25	75		0.996473
288		25	75		0.996473
315			50	50	1.0
331		50	50		1.0
368		50		50	1.0
376		50		50	1.0
387		33	33		0.997753
408		33	66		1.0
438		33	66		1.0
440			66	33	1.0
442	50	50			1.0
443		33	66		1.0
444	66	33			1.0
445			66	33	1.0
446	66			33	1.0
449	66	33			1.0
451		66	33		1.0
453		33	66		1.0
455		33	66		1.0
456			66	33	1.0
457	66	33			1.0
458	33		66		1.0
488	90			10	0.90298
491			90	10	0.90298
494	10			90	0.90298
495		10	70	20	0.999998
496	90	10			0.90298
498		90		10	0.90298
499	90		10		0.90298
502	20		70	10	0.999998
503	90		10		0.90298
504	90			10	0.90298
508		10	90		0.90298
509	90			10	0.90298
510		10	90		0.90298
515	20		80		0.999996
525		80		20	0.999996
531		40	40	20	1.0
535	90		10		0.90298
546	80		20		0.999996
555	40		60		1.0
626		14		85	0.993533
660	83			16	0.994512
661			83	16	0.994512
662	83			16	0.994512
663	83	16			0.994512
665	83	16			0.994512
684		87		12	0.992554
693	87			12	0.992554
706		14	85		0.993533
757			42	57	1.0
759		42		57	1.0
768	28		71		1.0
772		71		28	1.0
780		85		14	0.993533
781	28	57	14		1.0
786	57		42		1.0
796	50			50	1.0
798		50		50	1.0
800	33	33	33		1.0
817	66		33		1.0
828			36	63	1.0
843		10		90	0.90298
846			90	10	0.90298
850	40		60		1.0
852		60		40	1.0
859	20			80	0.999996
870			22	77	0.999999
882		88		11	0.923564
885	11			88	0.923564
892	87		12		0.992554
894		85	14		0.993533
930	66		33		0.997452
932			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain