SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5239

Length: 616 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5239

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9291	11/14
SustainPine v2.0	sp_v2.0_unigene66989	3/14

Source	Descriptions	Term	Type	Identity
AutoFact	Tryptophan synthase beta chain 2, chloroplastic n=1 Tax=Camptotheca acuminata RepID=TRPB_CAMAC	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	tryptophan synthase beta-subunit	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	96%
Blast2go		EC:4.2.1.2-	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	indoleacetic acid biosynthetic process	GO:0009684	Biological Process	96%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	96%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	96%
Blast2go	response to salt stress	GO:0009651	Biological Process	96%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	96%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	96%
Blast2go	tryptophan synthase activity	GO:0004834	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	96%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Tryptophan synthase, alpha chain	IPR002028	-	-
Sma3	Tryptophan synthase, beta chain, conserved site	IPR006653	-	-
Sma3	Tryptophan synthase, beta chain	IPR006654	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
165	42	42		14	1.0
166	14	14	42	28	1.0
167	14	14	71		0.984337
168		14		85	0.993533
169		42	42	14	1.0
170	42	14	42		1.0
171	14	28	57		1.0
225		14		85	0.993533
379	83	16			0.994512
380			16	83	0.994512
383		83	16		0.994512
384	83			16	0.994512
388	83	16			0.994512
394	83			16	0.994512
396	83			16	0.994512
408	90		10		0.90298
410			10	90	0.90298
413	11		88		0.923564
417	88		11		0.923564
418			11	88	0.923564
419		11		88	0.923564
422			88	11	0.923564
423	88	11			0.923564
425	88	11			0.923564
426	88			11	0.923564
427		11	88		0.923564
428	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain