SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5237

Length: 1431 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5237

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8300	34/36

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF588 multi-domain protein	-	-	4.0e-27	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	casp-like protein at2g28370	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NY60

Fln msg:

Fln protein: MNSSHPAVHPVDVPPTDVQDLPRVRMKDWQGMPGTLGGLSLRIGQVFFAVAAFSIMLSIEDFSTVTAFCYLVAATVLQCLWSLSLALIDGYALLVKRSLRNSLVVSLFVVGDGVTATLTFAAACASAGITVLIGNDLRECAQNHCAKYETATAMAFLSWFMVSPSFFLTFWMLAKR*

Protein Length: 178

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGCGTGCTTGACGTTCAAACATCATTCGGCCTCGTCCGGATGCTGTCTGACTTTGGCTGTATTCAATCTCAGAACATTCATCTCAACAAAGCCTCCCAGTAGTTGATTCAGGTTTTCTTATTCATTCAAATGGCGTATAGACATGTGAAGCCTATATAATTTGGGCATTGAAGAATAGTTCTGTGACGAAATAAA_-_ATGAATTCTAGTCATCCGGCCGTGCATCCGGTGGATGTACCTCCCACAGATGTCCAAGACCTTCCCAGAGTGAGAATGAAAGATTGGCAGGGAATGCCTGGAACGCTGGGGGGCCTTTCACTGAGAATTGGGCAGGTTTTCTTCGCGGTTGCAGCCTTCAGTATCATGCTATCCATTGAGGACTTCTCCACTGTCACTGCATTTTGTTATCTTGTGGCAGCGACAGTTTTGCAATGCTTATGGAGCTTATCACTGGCACTAATTGATGGATATGCATTGCTTGTAAAGCGCAGTCTACGGAATTCTCTTGTTGTCAGTCTTTTTGTTGTAGGTGATGGGGTTACTGCAACATTGACTTTTGCTGCTGCCTGTGCATCAGCGGGTATTACTGTTCTCATTGGAAATGATTTAAGAGAATGTGCCCAGAACCACTGTGCAAAATATGAAACTGCCACAGCTATGGCATTCTTGAGCTGGTTCATGGTTTCGCCATCATTTTTTTTGACATTTTGGATGCTGGCAAAGAGGTAA___TATTTGGTGTGCCTCGTTGAATAAGTCCATTCACTGTTAACACCAGAAGTGTATGCAGCTTGATTTGTCCATGAGAATAAAGCTTTCTGCATCAAGCCAATTACCTTTTTGGGGTAATAATGTCCACTGGAAGTTTTGATATGGAAGATATATTGGAGCTAAGCTAAAAGTTACCTAGATTGTCTAGAGTCCATTTCTATGTTACATGCAACCTTGCTAGTTCACAGAAGTGAAATATTCAGAGCAATGTTATGGCATTCATTTTTAATGAACTAATGACTTAGGTGTGGATGATTCCATTGAAGAGCAAACTACATCTTGACTTTGGAAGTTTATGGCAACCTATCTGTAAAATAGTTGAAAATAATGTTGTTGTTTCAGAAGTTACCTACTTTTGCTTTCTAGAAGGGTAGAGTTTTCTTAAAGGCCAATGGCCATAGAGATGTGTGAAACTAAATCCTCAAAATGGGGCATAACAACAAAAGTAACCCATAAGGGACAGTCACCTCTAAGCAACGTTAGTAACAAAGGTCATCATACGTTTTGAATCAGCTTGATTGACTTGCGAGTCTCATGACTGGTGTTGTGTTTGGTGCCAAGTTGATCGACCTACCAAATTTGACAATGACTACATCGACTGTTATGTTTGGTGGTAAGATTATTTCTTATTATTCAG

Fln Alignment:

Contig5237___MNSSHPAVHPVDVPPTDVQDLPRVRMKDWQGMPGTLGGLSLRIGQVFFAVAAFSIMLSIEDFSTVTAFCYLVAATVLQCLWSLSLALIDGYALLVKRSLRNSLVVSLFVVGDGVXXXXXXXXXXXXXGITVLIGNDLRECAQNHCAKYETATAMAFLSWFMVSPSFFLTFWMLAKR
A9NY60_______________MNSSHPAVHPVDVPPTDVPVVPRVRMKDWQGMPGTLGGLSLRIGQFCFAVAAFSIMLSIEDFSTVTAFCYLVAATVLQCLWSLSLAVIDGYALLVKRSLRNSLVVSLFVVGDGVTATLTFAAACASAGITVLIGNDLRECAQNHCSKYETATAMAFLSWFMVSPSFFLTFWMLATR

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
257	84		15		0.999986
265	15		84		0.999986
266	84	15			0.999986
267		15		84	0.999986
268			84	15	0.999986
270	84		15		0.999986
271		84	15		0.999986
274		84	15		0.999986
275		84		15	0.999986
279	84			15	0.999986
280		15	84		0.999986
521		11	88		0.923564
531	10		90		0.90298
563		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain