SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5207

Length: 1398 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5207

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23854	35/43
SustainPine v2.0	sp_v2.0_unigene64073	5/43
SustainPine v2.0	sp_v2.0_unigene77417	1/43

Source	Descriptions	Term	Type	Identity
AutoFact	transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb\|AAK64155.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85095.1\| unknown protein [Arabidopsis thaliana] gb\|AAD11993.2\| expressed protein [Arabidopsis thaliana] gb\|AEC09942.1\| tra	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	vacuolar amino acid transporter 1-like	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: your sequence is longer than subject: 196 - 161

Fln protein: MSMADRTQFDKVLVVSFVLCVIFYGGMAVMGFLMFGQGKLSQITLNLPQQVVASKVAVWTTVINPFTKYALLLNPVAKSLEELLPLQNSTSEWWASTFIRTILVISTVGVALLVPFFGLMMSLIGSVLSMLLAVIMPCVCFLRIRGKNATKIQVVLCNLIILIGLLSVVIGTYSSVARMAENYSDRGVTNGFHSL*

Protein Length: 197

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGACATGCTATAGAATATCGAGGACAAGGCTGCAGCTTTGTGCAAGCAGTATTTAATGGAGTGAATGTACTGGCTGGTGTAGGCCTTCTTTCTACCCCATATACTATTTTAGAAGCGGGTTGGATAAGTCTAGCATTATTGTTGCTGTTTGCCTTCATTTGCTGCTACACAGGTATTCTCTTACGTTACTGTTTTGAGAGCGAGGAAGGCATCTATACTTATCCAGATATTGGAGAGGTTGCTCTTGGGAGACTTGGTCGTTTTTTTATCTCTATCGTTTTGTACTGTGAACTCTATGCATACTGTGTGGAGTTTATCATACTGGAGGGAGACAATTTAACAAGGCTTTTTCCAGGTTTTCATTTTGATATTGCTGGGACTGAACTGAGTTCTCTCTATTCATTTGGAATTTTAGCTGCAGTGATAGTGCTGCCGACTGTTTGGCTGAAAGATTTGCGCATTCTTTCTTATTTCTCAGCTGGTGGAGTGCTTGCAACTGTTTTGGTTATCTTCGCAGTTTTCTGGGTGGGAGCCATAGATGGGGTAGGTTTCCACCCCAGTGGTTCACTGGTGAATTGGTCCAACCTTCCTTTTGCAGTTGGTGTGTATGGGTTCTGTTACTCTGGCCATTCAGTCTTCCCAAACATCTAT_-_ATGTCGATGGCGGACCGCACTCAATTTGACAAAGTACTAGTTGTGAGTTTTGTTTTATGTGTTATATTTTACGGTGGGATGGCAGTCATGGGATTTCTCATGTTTGGTCAGGGTAAACTTTCACAGATCACTTTGAACTTGCCACAACAAGTTGTTGCCTCAAAAGTTGCAGTCTGGACAACTGTGATCAATCCATTTACCAAATATGCTCTATTATTAAATCCTGTTGCAAAGAGCTTGGAGGAGTTGCTACCTTTGCAAAATTCAACTAGTGAATGGTGGGCTTCCACTTTTATACGGACAATCCTCGTCATCTCGACAGTTGGTGTTGCTCTTCTTGTGCCTTTCTTTGGGTTAATGATGTCCTTGATTGGTTCCGTCCTAAGCATGCTGTTGGCTGTGATAATGCCATGCGTCTGTTTTTTACGAATAAGGGGCAAGAATGCAACCAAAATCCAGGTTGTTCTCTGCAATCTTATTATCTTAATAGGCCTACTGAGTGTAGTTATTGGGACCTATTCTTCAGTAGCTAGAATGGCAGAAAATTATTCTGACAGAGGAGTCACAAACGGGTTCCATTCATTGTAA___TTGTTTTCATGCATTCAGAAAAGCACATGAGAAACTTCCAAGGAATCACGGTCCACATTTTTTAGTTGCAACCCTACAATCTAGGGGCGAATATTTATAAGCTTTAAAATATTAATCCGAACTTCTATGTATAT

Fln Alignment:

Contig5207___IFYGGMAVMGFLMFGQGKLSQITLNLPQQVVASKVAVWTTVINPFTKYALLLNPVAKSLEELLPLQNSTSEWWASTFIRTILVISTVGVALLVPFFGLMMSLIGSVLSMLLAVIMPCVCFLRIRGKNATKIQVVLCNXXXXXXXXXXXXXTYSSVARMAE
D5A864_______________MIYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSSDSWLVLW-GIGIRTLLVISTVAVALALPFFGYLMALIGSSLSCSVSIIIPSICYLKLFGASISRHEMSLIFIILILGIVTGIVGTYSSLQKIAD

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
160	66	33			0.997452
161			33	66	0.997452
163	66	33			0.997452
164			33	66	0.997452
167	33			66	0.997452
168		33		66	0.997452
169		33	66		0.997452
170		66		33	0.997452
173			33	66	0.997452
174		33		66	0.997452
179	33	66			0.997452
180		33		66	0.997452
783		33	66		0.997452
791			33	66	0.997452
792	33		66		0.997452
794	66	33			0.997452
795	33	66			0.997452
801			33	66	0.997452
803	66			33	0.997452
804		66	33		0.997452
805	66			33	0.997452
806		33	66		0.997452
953	85	14			0.993533
958	85			14	0.993533
962		14		85	0.993533
963			85	14	0.993533
965			85	14	0.993533
967	14			85	0.993533
968		14		85	0.993533
969		85		14	0.993533
972		83		16	0.994512
995	71		28		1.0
998			28	71	1.0
999		71		28	1.0
1004		30	69		1.0
1013		30		69	1.0
1014	30		69		1.0
1310		80	20		1.0
1331		14		85	0.993533
1332			14	85	0.993533
1333		14		85	0.993533
1344		80		20	0.995493
1345		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain