SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5196

Length: 683 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5196

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7923	17/19
SustainPine v2.0	sp_v2.0_unigene26953	1/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0790 FOG: TPR repeat, SEL1 subfamily	-	-	3.0e-25	27%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	64%
Blast2go	protein	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	76%
Blast2go	ER-associated protein catabolic process	GO:0030433	Biological Process	76%
Blast2go	binding	GO:0005488	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	membrane	GO:0016020	Cellular Component	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
56		66	33		0.997452
58		33		66	0.997452
59			33	66	0.997452
64		33		66	0.997452
69	66		33		0.997452
74			66	33	0.997452
78	75	25			0.996473
79	75			25	0.996473
81	25		75		0.996473
97			20	80	0.995493
99		20		80	0.995493
102	80			20	0.995493
111		80	20		0.995493
112	80		20		0.995493
119	80			20	0.995493
120	80	20			0.995493
121	20		80		0.995493
139	20			80	0.995493
182		20		80	0.995493
271		33		66	1.0
272			16	83	0.994512
274	66	16	16		0.988813
277			16	83	0.994512
280	83	16			0.994512
282		23		76	1.0
284			15	84	0.999986
286		15	23	61	1.0
289	23			15	1.0
291	15	23			1.0
292		76		23	1.0
295		76	23		1.0
296	15	84			0.999986
300		23		76	1.0
301	23			76	1.0
302		23	76		1.0
303	76			23	1.0
406		38		61	1.0
407		61		38	1.0
482			50	50	1.0
484	50	50			1.0
555	50	50			1.0
561		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain