SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5180

Length: 1028 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5180

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2887	12/17
SustainPine v2.0	sp_v2.0_unigene35651	3/17
SustainPine v2.0	sp_v2.0_unigene72853	2/17

Source	Descriptions	Term	Type	Identity
AutoFact	mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana] gb\|AAS49089.1\| At3g24730 [Arabidopsis thaliana] gb\|AEE76940.1\| mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	thioredoxin-like protein 4b	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	mitosis	GO:0007067	Biological Process	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	spliceosomal complex	GO:0005681	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	mRNA splicing factor, thioredoxin-like U5 snRNP	IPR004123	-	0.0	-
Sma3		IPR012335	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
528	80	20			0.995493
529			80	20	0.995493
530		20		80	0.995493
531	20			80	0.995493
546		16		83	0.994512
548	83			16	0.994512
550	83		16		0.994512
552		83	16		0.994512
554		16	83		0.994512
557			16	83	0.994512
559	83	16			0.994512
561	83		16		0.994512
562		83		16	0.994512
565	16		83		0.994512
590	83			16	0.994512
593	83		16		0.994512
594		16		83	0.994512
605	62	37			1.0
606			37	62	1.0
609	62		37		1.0
610			50	50	1.0
613	50	50			1.0
617		50		50	1.0
618	50		50		1.0
620	50	50			1.0
622		50	50		1.0
623	50			50	1.0
624		50		50	1.0
628	50	50			1.0
688	75	8		16	0.99999
689		16	83		0.999991
691		8	75	16	0.99999
696	75	25			1.0
697	75			25	1.0
700	75		25		1.0
701	75	25			1.0
702	75			25	1.0
704			75	25	1.0
708	83	16			0.999991
710		16		83	0.999991
711	16		83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain