SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5130

Length: 847 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5130

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9940	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb\|AAK25914.1\|AF360204_1 unknown protein [Arabidopsis thaliana] dbj\|BAB02324.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK64110.1\| unknown protein [Arabidopsis thaliana] gb\|AEE754	-	-	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	dna-directed rna polymerase i subunit rpa49	-	-	51%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	51%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	51%
Blast2go	Pyrimidine metabolism	00240	51%
Blast2go	Metabolic pathways	01100	51%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	51%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	51%
Blast2go	DNA binding	GO:0003677	Molecular Function	51%
Blast2go	nucleus	GO:0005634	Cellular Component	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA polymerase I associated factor, A49-like	IPR009668	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
11	66			33	0.997452
15	66	33			0.997452
17		66	33		0.997452
18	66			33	0.997452
19		33		66	0.997452
23		33		66	0.997452
24	33			66	0.997452
39	75	25			0.996473
40	75		25		0.996473
42	75	25			0.996473
44			75	25	0.996473
45		75	25		0.996473
46	25			75	0.996473
47		25		75	0.996473
48		25		75	0.996473
51	75		25		0.996473
53		25		75	0.996473
54	75			25	0.996473
56	75			25	0.996473
57		25	75		0.996473
59	75	25			0.996473
60			75	25	0.996473
253			66	33	0.997452
254		33		66	0.997452
255			33	66	0.997452
258	33			33	0.997753
259		33		66	0.997452
264			33	66	0.997452
341			12	87	0.992554
343	87		12		0.992554
345		10	90		0.90298
346		10	90		0.90298
347	90			10	0.90298
351	90			10	0.90298
355	10			90	0.90298
358	10			90	0.90298
478		87		12	0.992554
479	87			12	0.992554
480	87	12			0.992554
481	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain