SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5111

Length: 718 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5111

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11210	8/15
SustainPine v2.0	sp_v2.0_unigene35040	6/15

Source	Descriptions	Term	Type	Identity
AutoFact	sorbitol dehydrogenase-like protein [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	sorbitol dehydrogenase-like protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-iditol 2-dehydrogenase.	EC:1.1.1.14	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fructose and mannose metabolism	00051		0.0	80%
Blast2go	Metabolic pathways	01100		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	80%
Blast2go	L-iditol 2-dehydrogenase activity	GO:0003939	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
192		90	10		0.90298
193	90			10	0.90298
194	90	10			0.90298
195			10	90	0.90298
199		10		90	0.90298
200			90	10	0.90298
203	90		10		0.90298
206			10	90	0.90298
208		10		90	0.90298
209	10		90		0.90298
210	90	10			0.90298
212	10			90	0.90298
320		14	85		0.993533
321		85	14		0.993533
326		14	85		0.993533
330		85	14		0.993533
331	85	14			0.993533
332	85			14	0.993533
335			85	14	0.993533
336	85	14			0.993533
338		14	85		0.993533
341		14	85		0.993533
412		25		75	0.996473
414	75			25	0.996473
415		25		75	0.996473
416	75		25		0.996473
421	75	25			0.996473
422	75			25	0.996473
423	75			25	0.996473
424	75		25		0.996473
429	75		25		0.996473
431		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain