SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5101

Length: 798 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene5101 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6220	2/12
SustainPine v2.0	sp_v2.0_unigene25309	4/12
SustainPine v2.0	sp_v2.0_unigene33184	5/12
SustainPine v2.0	sp_v2.0_unigene50444	1/12

Source	Descriptions	Term	Type	Identity
AutoFact	Os06g0643700 protein n=3 Tax=Oryza sativa Japonica Group RepID=B7F9G7_ORYSJ	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	adipor-like receptor cg5315-like	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	74%
Blast2go	response to salt stress	GO:0009651	Biological Process	74%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	74%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase	IPR003386	-	-
Sma3	Hly-III-related	IPR004254	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
627		80		20	0.995493
628		80	20		0.995493
629	20	80			0.995493
632	20	80			0.995493
635	80		20		0.995493
637	20			80	0.995493
643	20	80			0.995493
644	80	20			0.995493
645	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain