SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5064

Length: 780 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5064

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6008	14/15

Source	Descriptions	Term	Type	Identity
AutoFact	Putative inositol transporter (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKB0_VITVI	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	probable inositol transporter 2-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	myo-inositol transport	GO:0015798	Biological Process	69%
Blast2go	signaling	GO:0023052	Biological Process	69%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	69%
Blast2go	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	pollen tube	GO:0090406	Biological Process	69%

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
60		66	33		0.997452
61	66			33	0.997452
62	66	33			0.997452
65	66		33		0.997452
66	33		66		0.997452
69	66			33	0.997452
73	66	33			0.997452
76			66	33	0.997452
78	33			66	0.997452
79		33		66	0.997452
80			66	33	0.997452
83	33		66		0.997452
88		40		60	1.0
90			60	40	1.0
91	60	40			1.0
92			40	60	1.0
95	40		60		1.0
96		40		60	1.0
97		40		60	1.0
101			40	60	1.0
102	60	40			1.0
104	60		40		1.0
106	60	40			1.0
107	40		60		1.0
111		40		60	1.0
112	40	60			1.0
172	20		80		0.995493
232		11		88	0.923564
234		88		11	0.923564
236		88	11		0.923564
237	88			11	0.923564
240		11	88		0.923564
244		88	11		0.923564
268	44	55			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain