SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5061

Length: 930 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene5061 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7213	10/19
SustainPine v2.0	sp_v2.0_unigene26101	9/19

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin:hydrogen symporter, putative n=1 Tax=Ricinus communis RepID=B9S6X0_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	uncharacterized transporter ybr287w-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%
Blast2go	integral to membrane	GO:0016021	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Auxin efflux carrier	IPR004776	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
820		85	14		0.993533
823	14			85	0.993533
827	14	85			0.993533
828	14			85	0.993533
830	85		14		0.993533
831			85	14	0.993533
833		14	85		0.993533
836		14		85	0.993533
843			83	16	0.994512
844		83	16		0.994512
847	83		16		0.994512
852		16	83		0.994512
853		16	83		0.994512
854	16			83	0.994512
856		83	16		0.994512
861	83		16		0.994512
864			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain