SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5058

Length: 1942 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene5058

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16466	71/80
SustainPine v2.0	sp_v2.0_unigene81857	1/80

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 10B homolog A n=2 Tax=Arabidopsis RepID=PS10A_ARATH	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	26s protease regulatory subunit	-	-	97%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	97%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	97%

Source	GOs	Term	Type	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	97%
Blast2go	cell wall	GO:0005618	Cellular Component	97%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	97%
Blast2go	nucleolus	GO:0005730	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWQ8

Fln msg: Overlapping hits, possible frame ERROR between 921 and 912,

Fln protein: MAEADDAAARLHAVREYRNKLLQHKELDARVRALRENLRNAKKDFDKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYATRSSTMxxxxxDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESTSHYNADFGKD*

Protein Length: 401

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCCGTTTATTGGTTTGCTCCGGAAACCCAACTAGATCTTTAAACCAGACTAGACCTGCGTTTGAAGCCGGTGCTCTGGTCTGGATTTCAAACCCTTGTATGTCCTGAAATCTTGAACACAAAGGGAGGCTGAAAAGGCCGTTGAAACTAATTGGAGAGGCAGCACAAAACAGAGGGAAAAATC_-_ATGGCGGAAGCAGATGACGCAGCAGCCCGTCTACACGCAGTTAGAGAGTACAGGAATAAGCTTCTTCAGCACAAGGAGCTCGACGCCAGAGTTCGCGCACTTCGAGAAAACTTGAGGAATGCCAAGAAGGATTTTGACAAAACTGAAGATGATTTAAAATCTCTTCAAAGTGTTGGTCAAATCATAGGAGAAGTGCTTAGACCACTTGATAATGAACGCTTGATTGTCAAAGCTAGCAGTGGTCCTAGATATGTGGTTGGTTGCCGGAATAAGGTGGATAAGGAGAAGCTCACTGCCGGAACACGAGTTGTTCTAGACATGACAACCCTCACAATAATGCGTGCTCTGCCTCGTGAGGTGGACCCGGTTGTATATAATATGCTTCACGAAGATCCTGGCAATGTGAGTTACTCTGCTGTGGGAGGGTTGGCAGATCAAATAAGGGAACTTAGAGAGTCTATCGAACTTCCTCTTATGAATCCTGAACTCTTTATTAGAGTTGGAATCAAGCCTCCCAAGGGGGTTCTTCTATATGGTCCTCCTGGTACAGGTAAAACACTGTTGGCAAGAGCTATTGCCAGTAATATTGACGCCAATTTCCTAAAGGTCGTTTCAAGTGCCATAATAGATAAATATATTGGTGAAAGTGCTAGGCTGATAAGGGAAATGTTTGGATATGCGACGAGATCATCAACCATGxxxxxxxxxxxxxxxGATGAAATAGATGCAATTGGTGGACGCCGTTTCAGTGAAGGAACTAGTGCTGATAGAGAGATTCAGAGGACACTGATGGAGTTACTTAATCAACTAGATGGGTTTGATCAGTTGGGAAAAGTAAAAATGATTATGGCAACCAATCGACCAGATGTTCTAGACCCTGCTTTACTTCGACCTGGTCGCTTGGATCGTAAGATTGAAATTCCATTACCAAATGAACAAGCAAGAATGGAAATTCTGAAAATACATGCTGCAGGAATAGCAAAACATGGAGACATAGATTATGAAGCTGTAGTGAAGCTGGCTGAGGGCTTCAATGGAGCAGACCTTCGAAATGTTTGCACAGAAGCTGGCATGTCAGCCATCCGAGCAGAGCGTGATTATGTAATTCATGAAGATTTTATGAAGGCTGTTCGGAAATTGAATGAAGCAAAGAAGCTAGAGTCCACTTCACACTATAATGCAGACTTTGGAAAGGACTAG___TAAAATGATGAAGAAACACCAAGCCAACAAGACAGCAACGCCGCAAACCTAGCTGACACTCGGGCCATTTTCCTTTGCACTTGTTATAGTTTTCATTATTGAGATGCCCGTTTTATGATTCATGTTCTCAAGTGTCATTTGATGGCAATTATTTCCATATCCTACTAATTATTGGACAATCACATTGCGATGCTTTGGGAAAAGAATATGCAAATAGTATTTGCTTGTCTTGCAGAAGATCTCCAATCACCATCTTTCAAAGCTTGGACATCTTATCTAAACATCTGAGTAACTATGTGATCAGATTTTGAGAACATTCATCATGAGTTTCGTGGGATATGTTCAATCTTAACCTTGCATCAAAATCTTGGATGAAATTTGAGTTGACACCCAGGCACTTCATATAATTGAACTTGTATGGAAGGACAGGTTAACCTCCAATGCATTGTATTACTTGAGTTTCAACATTTCTTAACATATTCTCATGTTTTATTACTACCTGATGCAGGTATTCATATCCTTTCTAAATTCTA

Fln Alignment:

Contig5058___RLHAVREYRNKLLQHKELDARVRALRENLRNAKKDFDKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYATRSSTMxxxxDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGDIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESTSHYNADFGKD
A9NWQ8_______________RLHAVNEYRKKLLQHKEFDARVRTLRENLRTAKKDFDKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRNKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLADQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCxxxxDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSSHYNADFGKD

SNPs (tot: 144)

Position	A %	C %	G %	T %	Probability
449	90	10			0.90298
451		90		10	0.90298
452	90	10			0.90298
456	10		90		0.90298
457		10		90	0.90298
459		90		10	0.90298
461	90		10		0.90298
463	90	10			0.90298
465	90		10		0.90298
467		10	90		0.90298
468	10			90	0.90298
469		10	90		0.90298
470			90	10	0.90298
471		10		90	0.90298
472	10			90	0.90298
475		22		77	0.999999
511	33	66			1.0
575		14	85		0.993533
578		85		14	0.993533
579		85		14	0.993533
580	14		71	14	0.984337
582		14		85	0.993533
586		28		71	1.0
591	80	20			0.995493
592	20			80	0.995493
622		20	80		0.995493
637	20		80		0.995493
808		40		60	1.0
826		40		60	1.0
832	83			16	0.994512
833	83	16			0.994512
838		66		33	1.0
839	83			16	0.994512
841	83		16		0.994512
842	83		16		0.994512
843		16		83	0.994512
844	83			16	0.994512
848	83	16			0.994512
850	83	16			0.994512
899	71			28	1.0
902	71			28	1.0
907	71	28			1.0
909		71		28	1.0
910	71		28		1.0
911	71		28		1.0
913		71		28	1.0
914	71		28		1.0
921		40		60	1.0
1011	20		80		0.995493
1084		16	83		0.994512
1085			16	83	0.994512
1088			16	83	0.994512
1089	80			20	0.995493
1094		80		20	0.995493
1102		20		80	0.995493
1106		20		80	0.995493
1107	20	80			0.995493
1148	40		40		1.0
1173		50		50	1.0
1226		25		75	0.996473
1229	75	25			0.996473
1234	75	25			0.996473
1235		25	75		0.996473
1236		75		25	0.996473
1246		25	75		0.996473
1247			75	25	0.996473
1248		25	75		0.996473
1249	25	75			0.996473
1309	25		75		0.996473
1312	10		90		0.90298
1319		10		90	0.90298
1320		10		90	0.90298
1321	90			10	0.90298
1324			11	88	0.923564
1325	88	11			0.923564
1326	88			11	0.923564
1327			11	88	0.923564
1331		11		88	0.923564
1332			88	11	0.923564
1333	88	11			0.923564
1390	10	90			0.90298
1391	90		10		0.90298
1440	25		75		0.996473
1441		75	25		0.996473
1450	80			20	0.995493
1451	80	20			0.995493
1453	80			20	0.995493
1456		20		80	0.995493
1458	80			20	0.995493
1460		80	20		0.995493
1461			20	80	0.995493
1465		80		20	0.995493
1466	80	20			0.995493
1467	83	16			0.994512
1468	66	16	16		0.988813
1471	16			83	0.994512
1473		16	83		0.994512
1476			20	80	0.995493
1477	80		20		0.995493
1478		25		75	0.996473
1480			25	75	0.996473
1482		25	75		0.996473
1483	25		75		0.996473
1484		25	75		0.996473
1485			75	25	0.996473
1487	25	75			0.996473
1491		11		88	0.923564
1494	11	88			0.923564
1516	89	10			0.999919
1517			10	89	0.999919
1519	89	10			0.999919
1520			10	89	0.999919
1524		10	89		0.999919
1525	89	10			0.999919
1527			89	10	0.999919
1528		89	10		0.999919
1529		89	10		0.999919
1531	47		42		1.0
1533			10	89	0.999919
1535		10		89	0.999919
1538	10		89		0.999919
1544		6		93	0.99903
1547	3	6		90	0.996531
1548		90	9		1.0
1550		57	6	36	1.0
1552	87	9			1.0
1553			87	9	1.0
1556			6	93	0.99903
1560			6	93	0.999153
1562		6	93		0.999153
1565		6	93		0.999153
1566			93	6	0.99903
1585	63	36			1.0
1626	92		2		0.98868
1638	37		62		1.0
1663	35			65	1.0
1737	71			28	1.0
1745		28		71	1.0
1778			69	30	1.0
1811		31		68	1.0
1814	31		68		1.0
1817		72		27	1.0
1894		28		71	1.0
1920		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain