SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5042

Length: 2920 nt

UniGene Fasta

>uagpf_v2_unigene5042
CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCATGTCACTCAATTCGTGTAGAATAAGGGTGCACGGTCTTTTCCCTCTATTCTGCTCATGATTCCACTGTGTATCGTATTGTTAGGATTTTGCAAGGAAGCGCCCTTCGTTTCCGGTCCCTTCAGAGCTCTCCTTCCGATTCTGGCGCCTACTCACTGCAAATTCAAGACCCCTCTCTTCAGTCAGTCTAGGAAATAGGTGCAATCACGAGATTTAGGAATTTTGAAAGAAAATGGGGTCGACGAGCAATTGGCTTGCATTTTCTCTGTCGCCTCATCTGACTGTGGATATGCCAGACACGACACAGCCACGGTCGGCCTCTGCTGCTTCTAATCATCGTCGTCATCATAATGATTTCAGCAATGGAACTGTTCATGATTGTTATAACCTTCATCCCACAGACACTATGCAGATGCCTTTGAGGCCTGATGGCTCGCTTTGTATACTGGAGGCACTCGACCGCACGCAGAATAATCAAGATTGGCGACTGAAAAGTCTGGGAAACCTTCATGGATGCATGGATTCGGAATCAGATGTGCAATCACAGCAGATTATGAAGTCGGAGCTGTCGATACTAGCCGGGGGTGGGGGTAGCAGTGAGCAGATGTCTGCATCCATTGGGCAGCACAACAACGTGGAGCAGCAAGAAGGGACAAAGCCGGACAATCATTTCTTGGTGGCGCTTCTCTGGGAGGACACTATAACGACGCGAGAACGGATTCAATCTACAGAAACGCGGACGCCTTCGATGACAAGATGATGGTGCCAGGGTTGCGGGATGTTGTGCCAAATTGCTTGAACGCTTTCGATGTCACCGACTCGGAATTATCGTCGGGCTCCAAGAAAACTGATCAGAACCAGGATCCTGCAGCGAGGAATATGAACCCAATCCAGAACACCCTCGTACAGGATTCATATGATGAAAACTCGAACGATCAATATATGTTCCAGGATTGCAGCCTCCAGCTTCCTCAGAATTCCGGGGCAAACAACATGATTGGTTTGTCGATGATCAAGACATGGCTGAGGAGCCAACCATGCCCAGAAAACAAGATGAATGCGGCTCCCAATTCAACTACCCCGACCTCAGCTAAAGATCAGTCCCTTGGCAACCTAACAAATTTACAATCTTTATCTCTCTCCATGAGCCCGGGCTCTCAGTCCAGCTCACCCTTGGCTCTTCCTGCGCAATACCAGAATACGAACGCTGACAGTCCTTCCTCCGAAAGTAAGAAACGCTCTTTAGATCAGAAGCAAGGAATTGTTGTAGAAGCTACCCCAAGAAAATCCATTGATACGTTTGGCCAGCGCACTTCAATCTATCGCGGTGTCACTAGACATAGATGGACTGGAAGGTACGAGGCTCATCTGTGGGACAATAGTTGTAGGAGAGAGGGACAGACTCGTAAAGGTAGACAAGTCTATTTAGGTGGATACGACAAAGAAGAGAAGGCAGCTAGGGCTTATGATCTTGCGGCTCTGAAATACTGGGGTCCAACAACTACCACAAATTTTCCGATTAGCAATTATGAAAGAGAGCTAGAGGAAATGAAACATATGACAAGGCAGGAATACGTTGCATCTCTCAGAAGGAAAAGCAGCGGATTCTCTAGAGGAGCATCAATTTACCGTGGAGTAACAAGACATCACCAACATGGAAGATGGCAAGCTCGAATAGGAAGAGTTGCTGGGAACAAAGATCTGTATCTGGGAACGTTCAGTTCACAGGAAGAGGCAGCAGAAGCCTATGATATCGCTGCCATCAAATTCAGAGGTCTCAATGCTGTGACAAACTTTGACATGAGCAGATACGACGTGAATAGCATACTTGAAAGCAGCACATTACCCATTGGGGGAGCTGCTGCAAAGCGCATCAAGGAAGCGGAGCCATCTGATCCAAGTGTAGATGGTCGTCGTACGGATGAAGAAATAAGCAGCACAGTCAGTTCACAGATAGCAGACACCTTAACCAGTTACGGCACCGCTGCTTATCCAAATGGGCACGCAGGATGGCCGATAATTGCATTTCCGCAGCAAACAAATCCACATGACAGCAGCTGTTATACAATCACCAAAGAGCTGCAGCTGGATGGTGCAAACAGGAACATAATAGTATTCAGAATCATGACCTCCAACTGCACTTTCAATCCAGCACTCAGAATTTTCTCCAACCAGCAATGATGACATCAAATGCTAATACTGTTTTGCACAATCTCATGAACTTGGAATCTTCTGCTCAGCTTGATGGAACTACCGCTAACTCTAATTCAGGCCTCTTCAGTAACATTTCAGGCAATTTGGCAGGCAACTGTCTGCAAATGACCAATTCAACTCTTCCATCTGGGATAGCAGTATCTGACAGTGCTAGAGCTCCTTTCAGTGCTGAAAATGATGGCAGTAGCACAAAAAATTCTGGTTATAACGATAACATGCTATCTAATTCAGACCCTTTTGCAAGGGGCCTATATTACTTATCACAGCATTCGCCCGGCCTTGTCAAAGCCAACTACGAAAATGCAACGTATAATAATTGGATGACACCAGCAGCTGTTCAGACTTTAGCACCAAGGCCTAATCTGACAGTTTGTCATGCTCCCATTTTCACTGTATGGAACGACACATAAGCAATATAGGCTAGTATCGCAGGACCAGTCCTTGCTTAATGGATTAAAGGACTGGATAACATTCCAAGGAAGAAAAGTTGAGCTGATCTTACTGGAATTGTGAAGCGAACCCTGCAACCCTTTTTAACGGAAACAGGCAATATAATGTACACCTTAGCTCCTACTATGCTCACATTTTTGAAAGGACCTAAGGCATTGTTGCTATTGGGTTTTTGTAGTTCGGCACTTAGCTACTTTTAAGCCTTTCAGGCTTCATTTTG

Ace file of the UniGene uagpf_v2_unigene5042

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22876	102/105

Source	Descriptions	Term	Type	Identity
AutoFact	Protein AINTEGUMENTA, putative n=1 Tax=Ricinus communis RepID=B9RM33_RICCO	-	-	58%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	61%
Blast2go	ap2 domain-containing transcription factor	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 147 aas, putative chimeric sequence, your sequence is shorter than subject: 475 - 606

Fln protein: MMVPGLRDVVPNCLNAFDVTDSELSSGSKKTDQNQDPAARNMNPIQNTLVQDSYDENSNDQYMFQDCSLQLPQNSGANNMIGLSMIKTWLRSQPCPENKMNAAPNSTTPTSAKDQSLGNLTNLQSLSLSMSPGSQSSSPLALPAQYQNTNADSPSSESKKRSLDQKQGIVVEATPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYERELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSSQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVNSILESSTLPIGGAAAKRIKEAEPSDPSVDGRRTDEEISSTVSSQIADTLTSYGTAAYPNGHAGWPIIAFPQQTNPHDSSCYTITKELQLDGANRNIIVFRIMTSNCTFNPALRIFSNQQ*

Protein Length: 476

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCATGTCACTCAATTCGTGTAGAATAAGGGTGCACGGTCTTTTCCCTCTATTCTGCTCATGATTCCACTGTGTATCGTATTGTTAGGATTTTGCAAGGAAGCGCCCTTCGTTTCCGGTCCCTTCAGAGCTCTCCTTCCGATTCTGGCGCCTACTCACTGCAAATTCAAGACCCCTCTCTTCAGTCAGTCTAGGAAATAGGTGCAATCACGAGATTTAGGAATTTTGAAAGAAAATGGGGTCGACGAGCAATTGGCTTGCATTTTCTCTGTCGCCTCATCTGACTGTGGATATGCCAGACACGACACAGCCACGGTCGGCCTCTGCTGCTTCTAATCATCGTCGTCATCATAATGATTTCAGCAATGGAACTGTTCATGATTGTTATAACCTTCATCCCACAGACACTATGCAGATGCCTTTGAGGCCTGATGGCTCGCTTTGTATACTGGAGGCACTCGACCGCACGCAGAATAATCAAGATTGGCGACTGAAAAGTCTGGGAAACCTTCATGGATGCATGGATTCGGAATCAGATGTGCAATCACAGCAGATTATGAAGTCGGAGCTGTCGATACTAGCCGGGGGTGGGGGTAGCAGTGAGCAGATGTCTGCATCCATTGGGCAGCACAACAACGTGGAGCAGCAAGAAGGGACAAAGCCGGACAATCATTTCTTGGTGGCGCTTCTCTGGGAGGACACTATAACGACGCGAGAACGGATTCAATCTACAGAAACGCGGACGCCTTCGATGACAAG_-_ATGATGGTGCCAGGGTTGCGGGATGTTGTGCCAAATTGCTTGAACGCTTTCGATGTCACCGACTCGGAATTATCGTCGGGCTCCAAGAAAACTGATCAGAACCAGGATCCTGCAGCGAGGAATATGAACCCAATCCAGAACACCCTCGTACAGGATTCATATGATGAAAACTCGAACGATCAATATATGTTCCAGGATTGCAGCCTCCAGCTTCCTCAGAATTCCGGGGCAAACAACATGATTGGTTTGTCGATGATCAAGACATGGCTGAGGAGCCAACCATGCCCAGAAAACAAGATGAATGCGGCTCCCAATTCAACTACCCCGACCTCAGCTAAAGATCAGTCCCTTGGCAACCTAACAAATTTACAATCTTTATCTCTCTCCATGAGCCCGGGCTCTCAGTCCAGCTCACCCTTGGCTCTTCCTGCGCAATACCAGAATACGAACGCTGACAGTCCTTCCTCCGAAAGTAAGAAACGCTCTTTAGATCAGAAGCAAGGAATTGTTGTAGAAGCTACCCCAAGAAAATCCATTGATACGTTTGGCCAGCGCACTTCAATCTATCGCGGTGTCACTAGACATAGATGGACTGGAAGGTACGAGGCTCATCTGTGGGACAATAGTTGTAGGAGAGAGGGACAGACTCGTAAAGGTAGACAAGTCTATTTAGGTGGATACGACAAAGAAGAGAAGGCAGCTAGGGCTTATGATCTTGCGGCTCTGAAATACTGGGGTCCAACAACTACCACAAATTTTCCGATTAGCAATTATGAAAGAGAGCTAGAGGAAATGAAACATATGACAAGGCAGGAATACGTTGCATCTCTCAGAAGGAAAAGCAGCGGATTCTCTAGAGGAGCATCAATTTACCGTGGAGTAACAAGACATCACCAACATGGAAGATGGCAAGCTCGAATAGGAAGAGTTGCTGGGAACAAAGATCTGTATCTGGGAACGTTCAGTTCACAGGAAGAGGCAGCAGAAGCCTATGATATCGCTGCCATCAAATTCAGAGGTCTCAATGCTGTGACAAACTTTGACATGAGCAGATACGACGTGAATAGCATACTTGAAAGCAGCACATTACCCATTGGGGGAGCTGCTGCAAAGCGCATCAAGGAAGCGGAGCCATCTGATCCAAGTGTAGATGGTCGTCGTACGGATGAAGAAATAAGCAGCACAGTCAGTTCACAGATAGCAGACACCTTAACCAGTTACGGCACCGCTGCTTATCCAAATGGGCACGCAGGATGGCCGATAATTGCATTTCCGCAGCAAACAAATCCACATGACAGCAGCTGTTATACAATCACCAAAGAGCTGCAGCTGGATGGTGCAAACAGGAACATAATAGTATTCAGAATCATGACCTCCAACTGCACTTTCAATCCAGCACTCAGAATTTTCTCCAACCAGCAATGA___TGACATCAAATGCTAATACTGTTTTGCACAATCTCATGAACTTGGAATCTTCTGCTCAGCTTGATGGAACTACCGCTAACTCTAATTCAGGCCTCTTCAGTAACATTTCAGGCAATTTGGCAGGCAACTGTCTGCAAATGACCAATTCAACTCTTCCATCTGGGATAGCAGTATCTGACAGTGCTAGAGCTCCTTTCAGTGCTGAAAATGATGGCAGTAGCACAAAAAATTCTGGTTATAACGATAACATGCTATCTAATTCAGACCCTTTTGCAAGGGGCCTATATTACTTATCACAGCATTCGCCCGGCCTTGTCAAAGCCAACTACGAAAATGCAACGTATAATAATTGGATGACACCAGCAGCTGTTCAGACTTTAGCACCAAGGCCTAATCTGACAGTTTGTCATGCTCCCATTTTCACTGTATGGAACGACACATAAGCAATATAGGCTAGTATCGCAGGACCAGTCCTTGCTTAATGGATTAAAGGACTGGATAACATTCCAAGGAAGAAAAGTTGAGCTGATCTTACTGGAATTGTGAAGCGAACCCTGCAACCCTTTTTAACGGAAACAGGCAATATAATGTACACCTTAGCTCCTACTATGCTCACATTTTTGAAAGGACCTAAGGCATTGTTGCTATTGGGTTTTTGTAGTTCGGCACTTAGCTACTTTTAAGCCTTTCAGGCTTCATTTTG

Fln Alignment:

Contig5042___DVTDSELSSGSKKTDQNQDPAARNMNPIQNTLVQDSYDENSNDQYMFQDCSLQLPQNSGANNMIGLSMIKTWLRSQPCPENKMNAAPNSTTPTSAKDQSLGNLTNXXXXXXXXXXXXXXXXXXXXXXXYQNTNADSPSSESKKRSLDQKQGIVVEATPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYERELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSSQXXXXXXYDIAAIKFRGLNAVTNFDMSRYDVNSILESSTLPIGGAAAKRIKEAE-PSDPSVD
Q76H96_______________DSQSYEAQPRSLQMQQEHHDLCEFVQESQQMPFQVQLDPNSNDT-MFADCSLQLPPGSG---MVGLSALKTWLRQNPS-----NADHHKVVPSGSGSPGKSNLGGGLGDFQSLTLSMSPGSQNSSAIISQPTIIDQCTPVETKKRGAGKAG-TKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTHINFPLETYEKEIEEMKNMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTL-IAGDLAKRNKEIEQSSEPSGD

SNPs (tot: 225)

Position	A %	C %	G %	T %	Probability
86	85	14			0.993533
87		14	14	71	0.984337
90	14			85	0.993533
92	14	85			0.993533
93		14		85	0.993533
95	85			14	0.993533
98	85	14			0.993533
100			14	85	0.993533
101		85		14	0.993533
108		14	85		0.993533
109	14			85	0.993533
121	77	22			0.999999
123			77	22	0.999999
124	77	22			0.999999
125			22	77	0.999999
127			22	77	0.999999
128	22			77	0.999999
129		22	77		0.999999
131	77			22	0.999999
132	77			22	0.999999
135	77	22			0.999999
136	77			22	0.999999
139			77	22	0.999999
141	22	77			0.999999
144		22		77	0.999999
145	22	77			0.999999
171			10	90	0.90298
174		90		10	0.90298
177		10		90	0.90298
178		10		90	0.90298
179		90		10	0.90298
185		90		10	0.90298
195			90	10	0.90298
196		90		10	0.90298
197	90			10	0.90298
198	90			10	0.90298
199	90		10		0.90298
204	90			10	0.90298
205			90	10	0.90298
206	90			10	0.90298
207		90		10	0.90298
208		90		10	0.90298
209		90	10		0.90298
212	10	90			0.90298
215		10		90	0.90298
217		90	10		0.90298
221		90	10		0.90298
222	90		10		0.90298
328		10		90	0.90298
331		90	10		0.90298
332	90			10	0.90298
338			90	10	0.90298
339	90			10	0.90298
340		90	10		0.90298
341	90		10		0.90298
343	90			10	0.90298
347	87			12	0.992554
349	12		87		0.992554
352		87		12	0.992554
683	40	60			1.0
685	40			60	1.0
686	40	60			1.0
688			20	60	0.99255
690	60	20	20		0.99255
692	20	80			0.995493
693	40			60	1.0
694	40			60	1.0
695	20		80		0.995493
696		20	80		0.995493
697		80		20	0.995493
698			20	80	0.995493
700	20			60	0.99255
701		60	40		1.0
702	80		20		0.995493
703	20	60	20		0.99255
704			20	80	0.995493
705	20	60			0.99255
706	60			20	0.99255
737		14		85	0.993533
738	85		14		0.993533
740	85	14			0.993533
741	85		14		0.993533
742		85		14	0.993533
748			85	14	0.993533
749	85			14	0.993533
751	85		14		0.993533
752	85	14			0.993533
753		85		14	0.993533
755		14	85		0.993533
757		14		85	0.993533
859			66	33	1.0
1108	83			16	0.994512
1109	83	16			0.994512
1110			16	83	0.994512
1112		83	16		0.994512
1114	83	16			0.994512
1117	83			16	0.994512
1118		83	16		0.994512
1119		83	16		0.994512
1121		83		16	0.994512
1123	83			16	0.994512
1130		83		16	0.994512
1145			12	87	0.992554
1147		12	87		0.992554
1149		87		12	0.992554
1150	87		12		0.992554
1155	87		12		0.992554
1156	87		12		0.992554
1158	87			12	0.992554
1159	87		12		0.992554
1160	87			12	0.992554
1161		12		87	0.992554
1162	12			87	0.992554
1163		12		87	0.992554
1164	87			12	0.992554
1257			12	87	0.992554
1260		87	12		0.992554
1262		87	12		0.992554
1263	12	87			0.992554
1264		12	87		0.992554
1265	87	12			0.992554
1266	87			12	0.992554
1267	87			12	0.992554
1269			14	85	0.993533
1270	85	14			0.993533
1271	85			14	0.993533
1273	85			14	0.993533
1274	85	14			0.993533
1277			85	14	0.993533
1353			12	87	0.992554
1357	87		12		0.992554
1360			12	87	0.992554
1362		12		87	0.992554
1364			87	12	0.992554
1365		87		12	0.992554
1435		12	87		0.992554
1437	87			12	0.992554
1439	87			12	0.992554
1445			88	11	0.923564
1447	77		22		0.999999
1448	88		11		0.923564
1449	77	22			0.999999
1450		11	77	11	0.968132
1451			88	11	0.923564
1454	88		11		0.923564
1455		22	77		0.999999
1456	77			22	0.999999
1457		88	11		0.923564
1459	88	11			0.923564
1461		11	77	11	0.968132
1464	11			88	0.923564
1479		66		33	1.0
1549	80			20	0.995493
1552	80		20		0.995493
1553	80	20			0.995493
1639	89	10			0.999919
1645		4	82	8	0.999136
1646		91		8	0.999807
1924	81			6	0.999943
2040	90	10			0.90298
2041	90		10		0.90298
2043		10	90		0.90298
2045			90	10	0.90298
2046		88	11		0.923564
2047	88			11	0.923564
2049		11	88		0.923564
2050		88		11	0.923564
2051	87			12	0.992554
2054	85	14			0.993533
2057			85	14	0.993533
2060			85	14	0.993533
2061	85	14			0.993533
2062	14			85	0.993533
2079		83		16	0.994512
2080	83			16	0.994512
2081	83	16			0.994512
2082	83		16		0.994512
2089		63	36		1.0
2090	63			36	1.0
2092	63		36		1.0
2097	63	36			1.0
2098			63	36	1.0
2099		63		36	1.0
2100	63		36		1.0
2106		36		63	1.0
2110	55	33			1.0
2111	33	66			1.0
2179	85	5	10		0.999793
2180	90			10	0.999898
2187		10		90	0.999898
2192	90		10		0.999898
2193			10	90	0.999898
2195		89		10	0.999919
2196	89		10		0.999919
2197			89	10	0.999919
2262	90		9		0.999872
2266	90	9			0.999872
2272	90			9	0.999872
2273	90		9		0.999872
2276		9		90	0.999872
2279	9			90	0.999872
2486		10		90	0.90298
2487		10		90	0.90298
2488		88		11	0.923564
2489	87			12	0.992554
2491	87		12		0.992554
2493		87		12	0.992554
2494		87	12		0.992554
2496	12			87	0.992554
2497		12		87	0.992554
2499		12	87		0.992554
2500	12	87			0.992554
2619	87	12			0.992554
2620	87		12		0.992554
2623	11			88	0.923564
2624		11	88		0.923564
2625	88			11	0.923564
2627	77	11		11	0.968132
2628			77	22	0.999999
2630			22	77	0.999999
2631			12	87	0.992554
2632		25	75		1.0
2639	12			87	0.992554
2641		87		12	0.992554
2784		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain