SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene5022

Length: 905 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene5022 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19411	7/16
SustainPine v2.0	sp_v2.0_unigene30049	3/16
SustainPine v2.0	sp_v2.0_unigene36127	1/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase, gag, polyprotein n=1 Tax=Volvox carteri f. nagariensis RepID=O04013_VOLCA	-	-	3.00018e-42	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	copia-type polyprotein	-	-	0.0	51%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

SNPs (tot: 140)

Position	A %	C %	G %	T %	Probability
215	14	85			0.993533
221	85			14	0.993533
224			14	85	0.993533
230	16	83			0.994512
233		16		83	0.994512
235		83		16	0.994512
246		33		66	1.0
252	42	14	42		1.0
255		37		62	1.0
281		87		12	0.992554
283	12		87		0.992554
291		12		87	0.992554
293	12	87			0.992554
294		87		12	0.992554
295	12		87		0.992554
300	87			12	0.992554
303	87		12		0.992554
305	12	87			0.992554
316			75	25	1.0
318	87		12		0.992554
325		87		12	0.992554
327	25		75		1.0
332		12		87	0.992554
333	75	25			1.0
353		12		87	0.992554
357	25		75		1.0
362	12	87			0.992554
364	12	87			0.992554
368		75		25	1.0
369	25		75		1.0
371			87	12	0.992554
378		87		12	0.992554
381	75		25		1.0
382	12		62	25	1.0
386		87		12	0.992554
390	22		77		0.999999
396			88	11	0.923564
397	11		88		0.923564
399		11		88	0.923564
404		88		11	0.923564
405	88	11			0.923564
407		11		77	0.968132
411	62		37		1.0
413		87	12		0.992554
414	87		12		0.992554
417		50		50	1.0
420			62	37	1.0
425		37		62	1.0
430	12	12	75		0.975346
432	12	87			0.992554
436		25		75	1.0
440		87		12	0.992554
441	87			12	0.992554
447		87		12	0.992554
450	87		12		0.992554
454	25		75		1.0
461	50		50		1.0
462		12		87	0.992554
467	37		62		1.0
468		62		37	1.0
469	12	87			0.992554
470		12		87	0.992554
473	25		75		1.0
474		12		87	0.992554
477		16	50	33	1.0
479	16	16		66	0.988813
483	83		16		0.994512
487			83	16	0.994512
496	83		16		0.994512
498	16	16		66	0.988813
518	33		66		1.0
521	33		66		1.0
524	16	83			0.994512
526	16		83		0.994512
528			16	83	0.994512
532			83	16	0.994512
534	50	50			1.0
535	50		50		1.0
536	50			50	1.0
538		80		20	0.995493
539	20		80		0.995493
544		75		25	0.996473
545	16		66	16	0.988813
552	20		80		0.995493
561		75		25	0.996473
562	25		75		0.996473
563		75		25	0.996473
575	50			50	1.0
586		75		25	0.996473
594		60	20	20	0.99255
600		40		60	1.0
601		16		83	0.994512
604		16	83		0.994512
606		50		16	1.0
613	80			20	0.995493
615	40		40	20	1.0
616			20	80	0.995493
617		80	20		0.995493
620	20		80		0.995493
621	80			20	0.995493
622	80	20			0.995493
623	20		80		0.995493
634	20		80		0.995493
644	16		83		0.994512
647	16	83			0.994512
650	16	83			0.994512
655	16		83		0.994512
667	83		16		0.994512
672		83		16	0.994512
681	16	83			0.994512
682			83	16	0.994512
705		83		16	0.994512
707			83	16	0.994512
708	83	16			0.994512
709	83		16		0.994512
710	83	16			0.994512
744	20		80		0.995493
760		80		20	0.995493
774		60		20	0.99255
775	20	20	60		0.99255
799		75		25	0.996473
807		25		75	0.996473
809		50		50	1.0
810	25		75		0.996473
814	50		50		1.0
818	25	75			0.996473
819		50		50	1.0
826		50		50	1.0
833	25	75			0.996473
841	25		75		0.996473
843		50		50	1.0
846		75	25		0.996473
856		33		66	0.997452
857	33	33		33	0.997753
858	66		33		0.997452
860		33	33		0.997753
863		33	33	33	0.997753
867	66		33		0.997452
868	33	33	33		0.997753
870	33	33	33		0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain