SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4996

Length: 855 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4996

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2675	17/20
SustainPine v2.0	sp_v2.0_unigene67408	2/20

Source	Descriptions	Term	Type	Identity
AutoFact	Oxysterol-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJA1_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	osbp(oxysterol binding protein)-related protein 1c	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	84%
Blast2go	steroid metabolic process	GO:0008202	Biological Process	84%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	84%
Blast2go	oxysterol binding	GO:0008142	Molecular Function	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Oxysterol-binding protein	IPR000648	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
221			50	50	1.0
232	66	33			1.0
233			33	66	1.0
237	66			33	1.0
239	33		66		1.0
241		33		66	1.0
242			66	33	1.0
243	66			33	1.0
246		66	33		1.0
248	66			33	1.0
256			66	33	1.0
257	66	33			1.0
258	33	66			1.0
281		10		90	0.90298
283		90		10	0.90298
287		90		10	0.90298
288	90		10		0.90298
289	90			10	0.90298
290		10		90	0.90298
291	10		90		0.90298
293	90			10	0.90298
294		10	90		0.90298
591		14		85	0.993533
643	75	25			0.996473
645	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain