SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4993

Length: 403 nt

UniGene Fasta

>uagpf_v2_unigene4993
CTTCAAGGGAAAGCAAGGTCCTCTGTATCGGTCATTTAAACGATCCACACGCTAATACTATCGTTCTTCACCGCTGTATTATGCTTTCGTTTGTTTGAACATATCTCAATCTCTCCGTGAAAGGTCATGGCGGGGGGAACGCTATCAGAGGTGTATCAGCAGGCAAGGCATTTACTGTTAAGGGTCAGAGATGGGTTGGAGAGGTTGGAGCGCTTGGAATCACATTCGTCATCATCTCTGCCATCTTCTTCCGGGGCAAGCGGACGGTCATACGACGACAGCGGCAATCCCGACCTCGCACAGAATCTCAAGCATGATCTATCTCAACTCCAAACGTACAGCGTCGAGATGGACAGGCTTTGGCGGTCACAAGTGCCAGCGTCTCAGCGCGATCTGTGGAAAC

Ace file of the UniGene uagpf_v2_unigene4993

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2301	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	golgi SNAP receptor complex member 2 [Arabidopsis thaliana] sp\|Q9SJL6.1\|MEM11_ARATH RecName: Full=Membrin-11; Short=AtMEMB11; AltName: Full=27 kDa Golgi SNARE protein; AltName: Full=Golgi SNAP receptor complex member 2-1 gb\|AAD31575.1\| putative cis-Golgi	-	-	49%
FL-Next	sp=Membrin-11; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	golgi snap receptor complex member 2	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular membrane fusion	GO:0006944	Biological Process	73%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	73%
Blast2go	SNAP receptor activity	GO:0005484	Molecular Function	73%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	73%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	73%
Blast2go	integral to membrane	GO:0016021	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Vesicle transport v-SNARE, N-terminal	IPR007705	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9SJL6

Fln msg: Distance to subject end: 144 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 92 - 225

Fln protein: MAGGTLSEVYQQARHLLLRVRDGLERLERLESHSSSSLPSSSGASGRSYDDSGNPDLAQNLKHDLSQLQTYSVEMDRLWRSQVPASQRDLWK

Protein Length: 93

Fln nts: CTTCAAGGGAAAGCAAGGTCCTCTGTATCGGTCATTTAAACGATCCACACGCTAATACTATCGTTCTTCACCGCTGTATTATGCTTTCGTTTGTTTGAACATATCTCAATCTCTCCGTGAAAGGTC_-_ATGGCGGGGGGAACGCTATCAGAGGTGTATCAGCAGGCAAGGCATTTACTGTTAAGGGTCAGAGATGGGTTGGAGAGGTTGGAGCGCTTGGAATCACATTCGTCATCATCTCTGCCATCTTCTTCCGGGGCAAGCGGACGGTCATACGACGACAGCGGCAATCCCGACCTCGCACAGAATCTCAAGCATGATCTATCTCAACTCCAAACGTACAGCGTCGAGATGGACAGGCTTTGGCGGTCACAAGTGCCAGCGTCTCAGCGCGATCTGTGGAAAC

Fln Alignment:

Contig4993___VMAGGTLSEVYQQARHLLLRVRDXXXXXXXXXXXXXXXXXXXXXXXXXXYDDSGNPDLAQNLKHDLSQLQTYSVEMDRLWRSQVPASQRDLWK
Q9SJL6_______________VEGGGSLSDVYSSAKRILLKARDGIERLERFES-----------------SSMDSPDLASSVKRDITEVRSLCSNMDTLWRSIPVKSQRDLWR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
87	14	42		42	1.0
88		14	42	42	1.0
90		42	57		1.0
92			14	85	0.993533
93			42	57	1.0
94	42			57	1.0
95		42	42	14	1.0
96		42		57	1.0
100	57		42		1.0
101	57	42			1.0
102		57		42	1.0
103	57		42		1.0
105	57	42			1.0
106	42			57	1.0
113		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain