SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4988

Length: 908 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4988

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14336	40/41

Source	Descriptions	Term	Type	Identity
AutoFact	glycerophosphoryl diester phosphodiesterase [Arabidopsis thaliana] gb\|AAG52406.1\|AC020579_8 putative glycerophosphodiester phosphodiesterase; 42559-40170 [Arabidopsis thaliana] gb\|AAL36393.1\| putative glycerophosphodiester phosphodiesterase [Arabidopsis t	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	glycerophosphoryl diester phosphodiesterase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerophosphodiester phosphodiesterase.	EC:3.1.4.46	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	glycerol metabolic process	GO:0006071	Biological Process	84%
Blast2go	lipid metabolic process	GO:0006629	Biological Process	84%
Blast2go	glycerophosphodiester phosphodiesterase activity	GO:0008889	Molecular Function	84%
Blast2go	vacuole	GO:0005773	Cellular Component	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycerophosphoryl diester phosphodiesterase	IPR004129	-	0.0	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
58	87			12	0.992554
59		12	87		0.992554
60	12			87	0.992554
394	80		20		0.995493
395	80	20			0.995493
411	66	33			0.997452
424		25		75	0.996473
427			25	75	0.996473
428	25		75		0.996473
430		25		75	0.996473
431	75			25	0.996473
432	75			25	0.996473
433	75		25		0.996473
438	75		25		0.996473
444	75			25	0.996473
445		25		75	0.996473
446	25		75		0.996473
545		33	66		1.0
558	88			11	0.923564
606			77	22	1.0
621	80	20			1.0
627	80		20		1.0
661	18		81		1.0
682	81		18		1.0
686	56			43	1.0
724	14		85		0.999981
731	14		85		0.999981
759		53		46	1.0
770	88	11			0.923564
780	88		11		0.923564
797		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain