SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4979

Length: 483 nt

UniGene Fasta

>uagpf_v2_unigene4979
GGAAACTGTTATTGCACGCCTTCAGGAATGTGGTCCACGTTTCACATTGAAGTTGCTTAGTTTGCAGCATGGAACATTCGATACAAAAGGCGGAGAATATGAATGGGTTCACAAGCCAGACATGGACACCAGTCGGAGAAGGTTTTTCTTATGATCTTACCATGTTTAGTTACATTGCTGCTTTCAGCAAGGTGTTTGTTGGAAGTTGCATATCACTGGTTGGTGCTGACCTACATCTGAAAATGAATCGGATGTATTTTTGATAGAATTGATTAAGATTTTGGCTGGAGGGGGGTAATTTGAGATTAGGTTACTTTTGTGAGAATATCTTATGAGGTTGCTGTCGTAAGATGCCAAGGAATGTGAAACTTTTTATTCAGTTTACATTAATATGTAGTGCTTTTATTTAACCATTTTTCAGTTTTACCATATATCTTGAGGTTTGTTTTTCCCTCCCTATTTTAACAGTTAAAATGTGTTTAG

Ace file of the UniGene uagpf_v2_unigene4979

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene798	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	MEE49; MEE49 (maternal effect embryo arrest 49)	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ribosome production factor	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	translation	GO:0006412	Biological Process	82%
Blast2go	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	82%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRF0

Fln msg: your sequence is shorter than subject: 51 - 341

Fln protein: ETVIARLQECGPRFTLKLLSLQHGTFDTKGGEYEWVHKPDMDTSRRRFFL*

Protein Length: 52

Fln nts: GGAAACTGTTATTGCACGCCTTCAGGAATGTGGTCCACGTTTCACATTGAAGTTGCTTAGTTTGCAGCATGGAACATTCGATACAAAAGGCGGAGAATATGAATGGGTTCACAAGCCAGACATGGACACCAGTCGGAGAAGGTTTTTCTTATGA___TCTTACCATGTTTAGTTACATTGCTGCTTTCAGCAAGGTGTTTGTTGGAAGTTGCATATCACTGGTTGGTGCTGACCTACATCTGAAAATGAATCGGATGTATTTTTGATAGAATTGATTAAGATTTTGGCTGGAGGGGGGTAATTTGAGATTAGGTTACTTTTGTGAGAATATCTTATGAGGTTGCTGTCGTAAGATGCCAAGGAATGTGAAACTTTTTATTCAGTTTACATTAATATGTAGTGCTTTTATTTAACCATTTTTCAGTTTTACCATATATCTTGAGGTTTGTTTTTCCCTCCCTATTTTAACAGTTAAAATGTGTTTAG

Fln Alignment:

Contig4979___ETVIARLQECGPRFTLKLLSLQHGTFDTKGGEYEWVHKPDMDTSRRRFFL
C0PRF0_______________ETVIARLQECGPRFTLKLLSLQHGTFDTKGGEYEWVHKPDMDTSRRRFFL

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
12			25	75	0.996473
21	75			25	0.996473
22		75	25		0.996473
23			75	25	0.996473
25	25	75			0.996473
26		25		75	0.996473
127	83		16		0.994512
129		16	83		0.994512
131	83			16	0.994512
132		83	16		0.994512
136	83			16	0.994512
138			16	83	0.994512
141		16	83		0.994512
144			80	20	0.995493
145	80	20			0.995493
157	83			16	0.994512
158			16	83	0.994512
160	83	16			0.994512
162		83	16		0.994512
164		16		83	0.994512
194	28	71			1.0
203		11		88	0.923564
206		11		88	0.923564
210	88	11			0.923564
211		11	88		0.923564
215		88	11		0.923564
216	88	11			0.923564
218	88		11		0.923564
224		12	87		0.992554
225	12		87		0.992554
228			87	12	0.992554
252	42			57	1.0
333	40	60			1.0
337		11		88	0.923564
338	88		11		0.923564
342		11	88		0.923564
343		11	88		0.923564
362	55		44		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain