SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4967

Length: 816 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene4967 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6527	16/17

Source	Descriptions	Term	Type	Identity
AutoFact	protein limit dextrinase [Arabidopsis thaliana] sp\|Q8GTR4.2\|PULA1_ARATH RecName: Full=Pullulanase 1, chloroplastic; Short=AtPU1; AltName: Full=Protein LIMIT DEXTRINASE; Short=AtLDA; Flags: Precursor gb\|AED90732.1\| protein limit dextrinase [Arabidopsis tha	-	-	68%
FL-Next	sp=NAD(P)H-quinone oxidoreductase subunit J, chloroplastic 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast.	-	-	65%
Blast2go	pullulanase chloroplastic-like	-	-	79%

Source	ECs	Term	Type	Identity
Blast2go	Pullulanase.	EC:3.2.1.41	-	79%
Blast2go	Limit dextrinase.	EC:3.2.1.142	-	79%
Blast2go	Alpha-amylase.	EC:3.2.1.1	-	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	79%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	79%
Blast2go	N-Glycan biosynthesis	00510	79%
Blast2go	Mucin type O-Glycan biosynthesis	00512	79%
Blast2go	Various types of N-glycan biosynthesis	00513	79%
Blast2go	Other types of O-glycan biosynthesis	00514	79%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	79%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	79%
Blast2go	Lipopolysaccharide biosynthesis	00540	79%
Blast2go	Peptidoglycan biosynthesis	00550	79%
Blast2go	Glycerolipid metabolism	00561	79%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	79%
Blast2go	Sphingolipid metabolism	00600	79%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	79%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	79%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	79%
Blast2go	Carotenoid biosynthesis	00906	79%
Blast2go	Zeatin biosynthesis	00908	79%
Blast2go	Flavonoid biosynthesis	00941	79%
Blast2go	Anthocyanin biosynthesis	00942	79%
Blast2go	Flavone and flavonol biosynthesis	00944	79%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	79%
Blast2go	Betalain biosynthesis	00965	79%
Blast2go	Biosynthesis of type II polyketide products	01057	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	79%
Blast2go	starch catabolic process	GO:0005983	Biological Process	79%
Blast2go	pullulanase activity	GO:0051060	Molecular Function	79%
Blast2go	limit dextrinase activity	GO:0010303	Molecular Function	79%
Blast2go	cation binding	GO:0043169	Molecular Function	79%
Blast2go	alpha-amylase activity	GO:0004556	Molecular Function	79%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Bacterial pullanase-associated domain	IPR005323	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-1,6-glucosidases, pullulanase-type	IPR011839	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
93		20		80	0.995493
96		20		80	0.995493
98		80		20	0.995493
99			20	80	0.995493
100	20	80			0.995493
102	80	20			0.995493
103	80			20	0.995493
105			20	80	0.995493
106			20	80	0.995493
111	80	20			0.995493
116	20		80		0.995493
170		20	80		0.995493
173	80	20			0.995493
174	80		20		0.995493
175	80			20	0.995493
176	80		20		0.995493
179		20		80	0.995493
183			20	80	0.995493
184			20	80	0.995493
187	80		20		0.995493
189		20	80		0.995493
191		20		80	0.995493
192			80	20	0.995493
196			80	20	0.995493
206	83	16			0.994512
207			16	83	0.994512
210	83		16		0.994512
211	83			16	0.994512
214		16		83	0.994512
215		16		83	0.994512
216		83		16	0.994512
217		83		16	0.994512
219		83	16		0.994512
221	83			16	0.994512
222	83		16		0.994512
223			83	16	0.994512
224		16	83		0.994512
227	83			16	0.994512
228	83	16			0.994512
229	16	83			0.994512
233		14		85	0.993533
237		14		85	0.993533
238			14	85	0.993533
241	14			85	0.993533
242		14	85		0.993533
243		14	85		0.993533
244	85			14	0.993533
245	85			14	0.993533
247		71	14		0.984337
249		85		14	0.993533
252		14		85	0.993533
254		14	85		0.993533
255			85	14	0.993533
327		10		90	0.90298
328			10	90	0.90298
329	90			10	0.90298
331	90		10		0.90298
332			90	10	0.90298
333	90		10		0.90298
335	90	10			0.90298
337	90			10	0.90298
339		90	10		0.90298
340	90	10			0.90298
344	90	10			0.90298
346		10	90		0.90298
402			10	90	0.90298
404			10	90	0.90298
406	90	10			0.90298
407		12		87	0.992554
410	87		12		0.992554
411			14	85	0.993533
413	85			14	0.993533
414	85		14		0.993533
416		14		85	0.993533
417	14			85	0.993533
418		14		85	0.993533
419			85	14	0.993533
420		14		85	0.993533
459	90	10			0.90298
460	90		10		0.90298
464			90	10	0.90298
465	90		10		0.90298
468	90	10			0.90298
469			90	10	0.90298
470		90		10	0.90298
471	90		10		0.90298
472	90		10		0.90298
515		90		10	0.90298
517	20			80	0.999996
657	85			14	0.993533
660			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain