SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4957

Length: 498 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene4957
CGTCGTGACCTTGGCTGTCACTCAATGTCTTGATTTTGTTTGTCTCTCAAATATGGTATTGAAGGTCCCGTTTATTTGATCCCAAAGGAAAAACTAAAGATAATCAATCAGGAAAGGGAAGTAATGGACAGATTGAATGGGTAGTCGATCAGGAACATCAGACAGTGACAAAAGCAGATAGAAGTGTATCCTATAAAGTACTGAAATCAGTAAAGGTTCATATAGAGGTGGTTGAACCTCAACCTAATCGGCCCAAGCTTCAGCTTACTCTCATCAATGTCTAGTTTCTGTTGTAATATATCCCTGTTTATTTTTCATGCCACTGGAAGTTGAGACATTGGAAGTTGGGACATCTAGTGTTCTTCTCATTATGATAAATGGCTTCTGTATGATATTCATTATTTTGATAAGTTAAATCTCAATGATGTCTTAGTTTATTAGTGGTATTTGCCTTTTTCGGTGGCCAACCATGACATCTGTTTTTTCTGATTAAAAACG

Ace file of the UniGene uagpf_v2_unigene4957 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2654	12/13

Source	Descriptions	Term	Type	Identity
AutoFact	exosome complex exonuclease DIS3/RRP44 [Arabidopsis thaliana] gb\|AAL09713.1\| At2g17510/MJB20.7 [Arabidopsis thaliana] gb\|AAL90959.1\| At2g17510/MJB20.7 [Arabidopsis thaliana] gb\|AAD32908.2\| putative mitotic control protein dis3 [Arabidopsis thaliana] gb\|AE	-	-	72%
FL-Next	tr=Mitotic control protein dis3, putative; Ricinus communis (Castor bean).	-	-	84%
Blast2go	exosome complex exonuclease dis3 rrp44	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Exoribonuclease II.	EC:3.1.13.1	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	84%
Blast2go	exoribonuclease II activity	GO:0008859	Molecular Function	84%
Blast2go	endomembrane system	GO:0012505	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide binding protein, PINc	IPR006596	-	0.0	-
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9S6W9

Fln msg: Separated hits, possible frame ERROR between 87 and 114, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 95 - 934

Fln protein: RRDLGCHSMS*FCLSLKYGIEGPVYLIPxxxxxxxxxxKGSNGQIEWVVDQEHQTVTKADRSVSYKVLKSVKVHIEVVEPQPNRPKLQLTLINV*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTCTTGATTTTGTTTGTCTCTCAAATATGGTATTGAAGGTCCCGTTTATTTGATCCCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGGGAAGTAATGGACAGATTGAATGGGTAGTCGATCAGGAACATCAGACAGTGACAAAAGCAGATAGAAGTGTATCCTATAAAGTACTGAAATCAGTAAAGGTTCATATAGAGGTGGTTGAACCTCAACCTAATCGGCCCAAGCTTCAGCTTACTCTCATCAATGTCTAGTTTCTGTTGTAATATATCCCTGTTTATTTTTCATGCCACTGGAAGTTGAGACATTGGAAGTTGGGACATCTAGTGTTCTTCTCATTATGATAAATGGCTTCTGTATGATATTCATTATTTTGATAAGTTAAATCTCAATGATGTCTTAGTTTATTAGTGGTATTTGCCTTTTTCGGTGGCCAACCATGACATCTGTTTTTTCTGATTAAAAACG

Fln Alignment:

Contig4957___KYGIEGPVYLIPKxxxxxxxxxKGSNGQIEWVVDQEHQTVTKADRXXXXXXXXXXXVHIEVVEPQPNRPKLQLTLI
B9S6W9_______________KYGIEGPVYLTPRxxxxxxxxxRGEKGGGEWFVDEQQQKIKKMDGSLSYGILQAVRIHLEVVEPQPNRPKLQLTLL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
269			20	80	0.995493
363	88			11	0.923564
364		88	11		0.923564
365	11	88			0.923564
366		88	11		0.923564
367	88			11	0.923564
368			11	88	0.923564
369	11			88	0.923564
372	88		11		0.923564
373		11		88	0.923564
375	11			88	0.923564
377			11	88	0.923564
378		88		11	0.923564
381		11		88	0.923564
382			11	88	0.923564
385			11	88	0.923564
407			16	83	0.994512
442		66		33	0.997452
443			33	66	0.997452
444	33			66	0.997452
445		66	33		0.997452
446	66			33	0.997452
449		33		66	0.997452
457			33	66	0.997452
458			33	66	0.997452
460		33	66		0.997452
461	66		33		0.997452
463	33	33		33	0.997753
467	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain