SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4955

Length: 959 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4955

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3549	17/20

Source	Descriptions	Term	Type	Identity
AutoFact	MAP kinase n=1 Tax=Selaginella moellendorffii RepID=D8SYB3_SELML	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	mitogen-activated protein kinase kinase 6	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	MAP kinase kinase activity	GO:0004708	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
133	33	66			0.997452
135		33		66	0.997452
136	33	66			0.997452
141		66		33	0.997452
142	33	66			0.997452
145			66	33	0.997452
147		66	33		0.997452
148	33			66	0.997452
153		66		33	0.997452
155		66	33		0.997452
157	33		66		0.997452
160		75	25		0.996473
162		25	75		0.996473
165			25	75	0.996473
166	25		75		0.996473
167		25		75	0.996473
168		25	75		0.996473
174		25	75		0.996473
184	25		75		0.996473
221		20	80		0.995493
224		20	80		0.995493
228		80	20		0.995493
231	80	20			0.995493
235			20	80	0.995493
236		20		80	0.995493
238	80		20		0.995493
240		20	80		0.995493
242			80	20	0.995493
300	87			12	0.992554
302		87	12		0.992554
303	75			25	1.0
304		12	87		0.992554
306	75	12			0.975346
307		12		75	0.975346
310			12	87	0.992554
315	12	87			0.992554
316		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain