SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4952

Length: 1365 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4952

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13876	15/51
SustainPine v2.0	sp_v2.0_unigene27902	8/51
SustainPine v2.0	sp_v2.0_unigene28876	23/51
SustainPine v2.0	sp_v2.0_unigene63836	2/51
SustainPine v2.0	sp_v2.0_unigene65708	2/51
SustainPine v2.0	sp_v2.0_unigene78266	1/51

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG1836 Predicted membrane protein	-	-	6.00036e-42	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	uncharacterized membrane protein sll0875-like	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF92, TMEM19	IPR002794	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNB3

Fln msg:

Fln protein: MVLLYLLPGSPVRISPHLPVPKPSIYALRKLLRRRENCSNTRRLPMTSVNAGLQLPGVLSEAVSAFQLSPPTWESAILSNTLIFLAGSPLLFVGLTTPGIGAAFLLGSLSWRAFGSRGFFAVVIYYLIGTGATKLKLKQKEAEGVAEKRKGRRGPSSVFGLELLVLWLWLIFGLGGIAFRNLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLITNLSVVPRGTEGAVSIEGTLAGLVASILLAYTCCLMGQVDNAGAIICVISSQLANVLESQIGASLQDKEGFKWLNNDVVNVINISSGTAFAMLLKYFFG*

Protein Length: 315

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTTTACGCCAGAATATGTTCGCCAGCTGAAACAATCAATTACATGGTTTTCGCCAGTCCTAGTC_-_ATGGTCCTCTTATATCTGCTTCCCGGGTCGCCAGTTCGAATCTCTCCCCATCTCCCTGTACCAAAGCCTTCAATTTATGCCCTAAGAAAGCTTCTGCGCAGGCGAGAGAATTGTTCAAACACCAGAAGACTCCCAATGACATCGGTCAACGCCGGGCTACAATTGCCGGGGGTTTTGTCGGAGGCAGTTAGCGCATTTCAGTTGTCTCCGCCAACATGGGAATCCGCTATACTTAGCAACACTCTCATATTTTTGGCGGGTTCTCCGTTACTTTTCGTCGGTCTCACGACTCCTGGCATTGGGGCCGCGTTCTTGCTGGGGAGCTTATCATGGAGGGCATTTGGAAGCAGAGGGTTTTTCGCCGTCGTTATTTATTATCTTATTGGTACAGGAGCTACAAAACTGAAGCTAAAACAGAAAGAGGCTGAAGGAGTTGCAGAGAAAAGGAAAGGAAGACGAGGGCCAAGCAGTGTTTTTGGTCTGGAGCTGCTGGTGCTTTGGCTTTGGCTCATTTTTGGGTTAGGTGGGATAGCATTCAGAAATCTTTGGCAGCTGGGATTTGTTGCAAGTTTTTGCACAAAGCTTAGTGATACAGTTTCCAGTGAGATTGGGAAGGCCTATGGTAAAACAACGTACCTTATCACAAACCTTTCAGTAGTTCCCAGGGGAACAGAAGGAGCTGTTAGTATCGAAGGAACTCTTGCTGGGTTAGTTGCATCCATACTACTTGCATATACTTGCTGTCTTATGGGTCAGGTAGATAATGCCGGAGCTATAATTTGTGTTATTTCTTCTCAGCTGGCAAATGTTCTTGAAAGTCAAATTGGCGCTTCTTTGCAAGACAAAGAAGGTTTTAAATGGCTTAATAATGATGTTGTCAACGTTATCAACATTTCGAGTGGAACTGCATTTGCTATGTTGCTTAAATATTTTTTTGGCTAA___CAAAGTTGGAAAGTATAATATCGTCTCCATCTTGGGCCTCCATTGAAAGTACAGATTAAACTGCATTTGAATCGATGTGTCTGAATTAATATTTTTCTTATATTTCGAAATGGCAAGCTGCTCACATGTAACTATTTCTGTATTATTTTTAAAAGCTCAGTCGTATATTTTATTTTCCAGATCTCATATGAATCAATGCCTTTATAAGGCTTAGGCCCCTGGGCTGCTTTGAAGAGTTACGAAATTGTGGTATATCTAAAATAAAATTTGTGTAGACATCGGTCTCACAGACATATTTTGAATCAATATCAAAAATTTAATGATTTTTTCAC

Fln Alignment:

Contig4952___PGSPVRISPHLPVPKPSIYALRKLLRRRENCSNTRRLPMTSVNAGLQLPGVLSEAVSAFQLSPPTWESAILSNTLIFLAGSPLLFVGLTTPGIGAAFLLGSLSWRAFGSRGFFAVVIYYLIGTGATKLKLKQKEAEGVAEKRKGRRGPSS--XXXXXXXXXXXXXXXXXXXXAFRNLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLITNLSVVPRGTEGAVSIEGTLAGLVASILLAYTCCLMGQVDNAGAIICVISSQLANVLESQIGASLQDKEGFKWLXXXXXXXXXXSSGTAFAMLLKYFFG
A9NNB3_______________PGLPVRISTHPSALKPSIYALRKLLRRRKVYSNTRRLPMAAVNAELQLPGVLSNAVSAFQLFPPTWESAILSNTLIFLAGSPLLFVGLTTPGIGAAFLLGSLSWRAFGSRGFFAVVIYYLIGTGATKLKLKQKEAEGVAEKRKGRRGPSSVIGSGAAGCLCALGSIFGLGGIAFGNLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLITNLSVVPRGTEGAVSIEGTLAGLVASILLAYTCCLMGQVDGVGAIICVISSQLANIFESQIGASFQDKEGFKWLNNDVVNVINISSGTAFAMLLKYFLG

SNPs (tot: 98)

Position	A %	C %	G %	T %	Probability
123		11	88		0.923564
128		88		11	0.923564
129		88	11		0.923564
131		11	88		0.923564
132		11		88	0.923564
134		88		11	0.923564
136	88		11		0.923564
137	88	11			0.923564
139		88	11		0.923564
142	11			88	0.923564
144		88		11	0.923564
146	11	88			0.923564
326	87		12		0.992554
327	12			87	0.992554
328	87	12			0.992554
332	87		12		0.992554
335	87		12		0.992554
336	87			12	0.992554
343	12	87			0.992554
411		10		90	0.90298
467	77	11			0.968132
468			12	87	0.992554
469		25		75	1.0
470			14	85	0.993533
471	85	14			0.993533
650			16	83	0.994512
652		16		83	0.994512
654			83	16	0.994512
655		83	16		0.994512
657		16	83		0.994512
660			83	16	0.994512
663	83	16			0.994512
665			16	83	0.994512
667		16	83		0.994512
668	16			83	0.994512
669		16		83	0.994512
670			83	16	0.994512
774	80			20	0.995493
775	80			20	0.995493
779	80	20			0.995493
783	66	33			1.0
785		66		33	1.0
786		33		66	1.0
789			33	66	1.0
791		33	66		1.0
792		33		66	1.0
793	66			33	1.0
795		66	33		1.0
797	66	33			1.0
798	66			33	1.0
800			66	33	1.0
801	66	33			1.0
806	16			83	0.994512
808			16	16	0.988813
834			25	75	1.0
838	75		25		1.0
840	75		25		1.0
841	25			75	1.0
842	75	25			1.0
853	25			75	1.0
854		28		71	1.0
855	71			28	1.0
856		28		71	1.0
857	28		71		1.0
895		12		87	0.992554
896			12	87	0.992554
900	12			87	0.992554
904	87			12	0.992554
909			87	12	0.992554
912	87			12	0.992554
913	87	12			0.992554
914	12			87	0.992554
932		22		77	0.999999
934			77	22	0.999999
937		77		22	0.999999
938			22	77	0.999999
939	22			77	0.999999
941		25		75	1.0
945		75	25		1.0
946	75	25			1.0
947	75			25	1.0
949	75			25	1.0
952	85	14			0.993533
953	71	14		14	0.984337
954		14	71	14	0.984337
955	85	14			0.993533
957		12	75		0.975346
960			12	87	0.992554
962			12	87	0.992554
964	87	12			0.992554
965	87			12	0.992554
972	87		12		0.992554
973	87			12	0.992554
974		12		87	0.992554
976	87	12			0.992554
978		12	87		0.992554
984	25			75	1.0
985		25	75		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain