SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene4912

Length: 1622 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene4912

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7379	41/44
SustainPine v2.0	sp_v2.0_unigene64751	2/44

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase 2, beta polypeptide [Arabidopsis thaliana] sp\|O80507.1\|CSK2E_ARATH RecName: Full=Putative casein kinase II subunit beta-4; Short=CK II beta-4 gb\|AAC27470.1\| putative casein kinase II beta subunit [Arabidopsis thaliana] gb\|AAM65621.1\| putativ	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	casein kinase beta polypeptide	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	86%
Blast2go	positive regulation of circadian rhythm	GO:0042753	Biological Process	86%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	86%
Blast2go	protein kinase regulator activity	GO:0019887	Molecular Function	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%
Blast2go	protein kinase CK2 complex	GO:0005956	Cellular Component	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2P6

Fln msg: Separated hits, possible frame ERROR between 730 and 732,

Fln protein: MLKNKGSMRGGGSGARYGLNTGDFNTKSLKSPVTLERSPTYGSKKRSENASTSTPKGKDPKFALHSPPEEISDTESEETDLSGSEGDDTSWISWFCGLKGNEFFCEIDEDYIHDEFNLCGLSGQVPYYDYALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCxxICCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSKYQINIDGAYFGTTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCCATATAGAAATATAGAGGCAGATAAATAATTAGAGGAAAGAAGTACGCTTATTTGTTCAACCATTCAATTTACAGGGAGCAGGGAACAAACGGACGGACGAGGGTTGAAAGGGGTTTGGCAAAAGAGAAAT_-_ATGTTGAAAAACAAGGGGTCCATGCGAGGTGGAGGATCAGGGGCAAGATATGGGTTAAATACAGGTGATTTTAATACCAAATCTCTGAAATCTCCGGTGACTCTGGAGCGATCCCCCACTTATGGTTCCAAAAAACGTTCAGAGAATGCCTCTACATCTACTCCGAAAGGGAAGGACCCCAAGTTCGCTCTTCACTCTCCACCAGAAGAAATTTCAGACACGGAGAGTGAAGAGACAGATCTTAGTGGTTCTGAGGGAGATGACACATCTTGGATTTCCTGGTTTTGTGGATTAAAAGGAAATGAGTTCTTCTGTGAAATTGATGAAGATTATATACATGATGAATTTAATTTATGCGGTCTTAGTGGACAAGTGCCCTACTATGACTATGCCCTTGATATGATTCTTGACAATGATGCTTTGAGTGGGGATATAGATAGTGAAGAGCAGAATGAAATGGTAGAGTCTGCAGCAGAATTATTGTATGGGCTAATTCATCTTCGCTATATCTTGACAAGTAAAGGGCTGAATGCTATGCTTGAAAAATACAAGAGAGTTGATTTTGGAAGATGCCCxxxGATTTGTTGTGGAGGGCAACCGTGCCTGCCTGCAAGTCAGTCAGACATTCCTCGACAGGGCACTGTGAAGATCTATTGTCCGAAATGTGAAGATCTGTATTACCCAAGGTCTAAATATCAGATTAATATTGATGGAGCTTATTTTGGAACTACGTTTCCACATCTATTTCTGATGACCTATCCAACAGTGAAGCCACCCAAACCTGTGCAAACATATGTTCCACGTGTATATGGCTTCAAACTGCACCAGAGTGCCAGGTAG___CCGGTGTTCATGGCTATAGAAAGATTGACGCAAGTAAAATGCCATTTATATTGAAATTATTGGAATTTACTGCAGGCATTTGGAATTCTGATGGTTGGAATTGAAACAAGTTTGATGTCAAATGACATCAATTTATTCATTTTAAGAGGCCCCTTTTAAAGTCATTAATTTCAAGGGGGTTCCTTTTTGAAGTCGGCTTAATGGCTGGTTGGCTCTTTATTTTTATATCTGCCATTCTTATTTAAGTTCTTAGCAGCTTCTGCAAGCTCAATTCTACTCAAACGTGTCAACATTCAGGTGCAGTTCCCTGCTCTTTTTGTAACATAATGTTCTAATCGATGTTAGTAGATGATTTGGTTTTATCACGCCTGAAATGATCCTTCAGGAATGGATACATTTGTTGCAGAGCATTCATTCGTATTGATTTGGTTGCAAAAGATGTTGTTTTCTGAAATGATTATGGGTGGTTTTTATATTAGAAAATGGAATACACTTTTCCATTAACATCATTGTGTAGCATAAAGATGCCCCAGTGAAAGGTTTGAGTATGCAAAGGGGTTTCTAAAGGTACGCTAAGTTCTCCAAACAAAACTCCTGTTCTTATCCTCAAACAGTATATTTATAAGGTTT

Fln Alignment:

Contig4912___MLKNKGSMRGGG-----SGARYGLNTGDFNTKSLKSPVTLERSPTYGSKKRSENASTSTPKGKDPKFALHSPPXXXXXXXXXXXXXXXXXXXXTSWISWFCGLKGNEFFCEIDEDYIHDEFNLCGLSGQVPYYDYALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCPxICCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSKYQINIDGAYFGTTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR
A9P2P6_______________MLKNKGSMRGGGGTSGGSGARYGLNTGDFNTKSLKSSVTLERSPTYASKKRSENASTSAPKGKDPKLALHSTPEEISDTESEETDLSGSEGDDSSWISWFCGLKGNEFFCEIDEDYIHDEFNLCGLSGQVPYYDYALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCPxVCCGGQPCLPASQSDIPRQGTVKIYCPKCEDLYYPRSKYQINIDGAYFGTTFPHLFLMTYPTVKPPKPVQTYVPRVYGFKLHQSAR

SNPs (tot: 113)

Position	A %	C %	G %	T %	Probability
116		30	70		1.0
118	70			30	1.0
125		20	70	10	0.999998
126	70			30	1.0
127			80	20	0.999996
129		10	90		0.90298
130		20		80	0.999996
132		10	90		0.90298
133	80			20	0.999996
134	70	30			1.0
135	90			10	0.90298
136		30	70		1.0
137	10		70	20	0.999998
138		20	80		0.999996
139	20		80		0.999996
143			80	20	0.999996
188			62	37	1.0
360		75	25		0.996473
361	75			25	0.996473
362		25	75		0.996473
363	75		25		0.996473
364	75			25	0.996473
367	75	25			0.996473
368	75	25			0.996473
372			25	75	0.996473
374	75			25	0.996473
376	75			25	0.996473
381		25	75		0.996473
382	25		75		0.996473
415		20	80		0.995493
417	80			20	0.995493
418		20	80		0.995493
419	80		20		0.995493
426	80			20	0.995493
429		80	20		0.995493
430		20		80	0.995493
433			80	20	0.995493
434	80	20			0.995493
435	20			80	0.995493
436		20		80	0.995493
439	20	80			0.995493
556			16	83	0.994512
558		16	83		0.994512
559	83		16		0.994512
561	83		16		0.994512
562	16			83	0.994512
563		16	83		0.994512
564	83	16			0.994512
567	16		16		0.988813
568		83	16		0.994512
569		16		83	0.994512
572	83			16	0.994512
575	83	16			0.994512
577		20	80		0.995493
718	66	33			0.997452
720	66			33	0.997452
721		33	66		0.997452
722			33	66	0.997452
726		33		66	0.997452
727		33		66	0.997452
732	66	33			0.997452
733	66			33	0.997452
905		80		20	0.995493
942		85	14		0.993533
943	85		14		0.993533
944		66		16	0.988813
946		83	16		0.994512
947	66			33	1.0
948	66		16	16	0.988813
949	83		16		0.994512
950		83	16		0.994512
953			83	16	0.994512
954			16	83	0.994512
957	83			16	0.994512
958	66	16	16		0.988813
959	66			33	1.0
962		14		71	0.984337
963	71	14	14		0.984337
964	14			85	0.993533
968	14			85	0.993533
971	85			14	0.993533
972		85		14	0.993533
974			14	85	0.993533
975		14	85		0.993533
977	85		14		0.993533
980		14		85	0.993533
981			85	14	0.993533
982		14	85		0.993533
983	14	85			0.993533
1119	71	28			1.0
1122			28	71	1.0
1126		28		71	1.0
1127		28	71		1.0
1129		71		28	1.0
1130	71		28		1.0
1131	71		28		1.0
1132	71	28			1.0
1135	71			28	1.0
1142		14		71	0.984337
1143			12	87	0.992554
1145	87	12			0.992554
1146			14	85	0.993533
1148		85	14		0.993533
1150		14		85	0.993533
1151		14		85	0.993533
1154	85		14		0.993533
1155	85		14		0.993533
1156		14	85		0.993533
1157	85			14	0.993533
1159			83	16	0.994512
1163		83		16	0.994512
1222			66	33	1.0
1497	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain